Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1185

Experiment: Nitrate reduction, replicate C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate C
1,334,579	-				-0.1
1,334,616	+				-0.5
1,334,617	-				+0.3
1,334,617	-				+1.5
1,334,631	+				-0.5
1,334,631	+				+0.9
1,334,631	+				+0.5
1,334,631	+				-0.5
1,334,631	+				+0.5
1,334,631	+				-1.6
1,334,631	+				+1.5
1,334,631	+				+0.8
1,334,632	-				-1.6
1,334,632	-				-0.3
1,334,632	-				+1.5
1,334,647	+				+1.5
1,334,647	+				-1.9
1,334,647	+				-0.8
1,334,647	+				-1.1
1,334,647	+				+0.8
1,334,647	+				-0.1
1,334,647	+				+0.8
1,334,647	+				+0.1
1,334,648	-				-0.6
1,334,648	-				-0.3
1,334,684	+				+1.9
1,334,844	+				+0.5
1,335,339	+				+1.1
1,335,339	+				+1.5
1,335,340	-				+2.1
1,335,340	-				+0.2
1,335,388	+				+0.9
1,335,388	+				-0.8
1,335,388	+				+0.1
1,335,389	-				-0.8
1,335,389	-				-0.1
1,335,408	+				+1.2
1,335,408	+				-1.1
1,335,408	+				+0.9
1,335,409	-				+0.5
1,335,409	-				+0.1
1,335,409	-				+0.5
1,335,409	-				+0.1
1,335,477	+				+0.2
1,335,478	-				+0.3
1,335,478	-				-1.4
1,335,485	+				+0.2
1,335,485	+				+0.4
1,335,485	+				-0.1
1,335,485	+				-1.6
1,335,485	+				+1.5
1,335,485	+				+0.8
1,335,486	-				-2.2
1,335,486	-				+0.9
1,335,486	-				-0.7
1,335,486	-				-0.4
1,335,486	-				-0.1
1,335,486	-				+1.4
1,335,486	-				-1.8
1,335,486	-				+0.0
1,335,486	-				+0.7
1,335,486	-				-0.2
1,335,560	+				+2.3
1,335,560	+				+5.7
1,335,560	+				+2.5
1,335,560	+				+2.9
1,335,561	-		Pf1N1B4_1185	0.10	+2.3
1,335,561	-		Pf1N1B4_1185	0.10	+3.4
1,335,561	-		Pf1N1B4_1185	0.10	+4.4
1,335,561	-		Pf1N1B4_1185	0.10	+5.9
1,335,561	-		Pf1N1B4_1185	0.10	+4.5
1,335,623	+				+1.5
1,335,624	-		Pf1N1B4_1185	0.18	+4.1
1,335,624	-		Pf1N1B4_1185	0.18	+4.0
1,335,624	-		Pf1N1B4_1185	0.18	+3.5
1,335,624	-		Pf1N1B4_1185	0.18	+3.8
1,335,677	+		Pf1N1B4_1185	0.25	+2.9
1,335,677	+				+0.3
1,335,677	+		Pf1N1B4_1185	0.25	+2.2
1,335,678	-		Pf1N1B4_1185	0.25	+3.8
1,335,678	-		Pf1N1B4_1185	0.25	+1.5
1,335,678	-				+1.5
1,335,678	-		Pf1N1B4_1185	0.25	+2.4
1,335,678	-				+2.5
1,335,678	-		Pf1N1B4_1185	0.25	+3.9
1,335,840	-		Pf1N1B4_1185	0.46	+3.0
1,335,911	+		Pf1N1B4_1185	0.56	+4.4
1,335,911	+		Pf1N1B4_1185	0.56	+2.6
1,335,914	+				+3.5
1,335,915	-		Pf1N1B4_1185	0.56	+5.5
1,335,915	-		Pf1N1B4_1185	0.56	+3.2
1,335,915	-		Pf1N1B4_1185	0.56	+3.5
1,335,915	-		Pf1N1B4_1185	0.56	+4.1
1,335,936	+		Pf1N1B4_1185	0.59	+4.3
1,335,937	-		Pf1N1B4_1185	0.59	+4.1
1,336,034	+		Pf1N1B4_1185	0.72	+2.1
1,336,034	+		Pf1N1B4_1185	0.72	+1.8
1,336,034	+		Pf1N1B4_1185	0.72	+3.1
1,336,035	-		Pf1N1B4_1185	0.72	+2.4
1,336,035	-		Pf1N1B4_1185	0.72	+6.0
1,336,035	-		Pf1N1B4_1185	0.72	+3.2
1,336,035	-		Pf1N1B4_1185	0.72	+3.1
1,336,035	-		Pf1N1B4_1185	0.72	+3.8
1,336,035	-		Pf1N1B4_1185	0.72	+4.4
1,336,035	-		Pf1N1B4_1185	0.72	+3.0
1,336,210	-				+5.8
1,336,292	+				+0.9
1,336,293	-				-0.5
1,336,293	-				-0.8
1,336,293	-				-2.3
1,336,303	-				-0.5
1,336,411	+				+2.4
1,336,411	+				+0.9
1,336,411	+				+0.1
1,336,412	-				-0.9
1,336,423	-				+0.5
1,336,452	-				-3.3
1,336,455	-				-0.2
1,336,462	-				+1.2
1,336,499	+				-0.8
1,336,499	+				+0.8
1,336,500	-				-1.5
1,336,500	-				-0.8
1,336,500	-				+0.2
1,336,500	-				-0.8
1,336,500	-				-0.9
1,336,500	-				-1.6
1,336,513	+				-1.6
1,336,535	+				-1.1
1,336,590	+				-1.4
1,336,590	+				-0.1
1,336,648	+				-0.6
1,336,649	-				-0.6
1,336,736	+		Pf1N1B4_1186	0.13	+0.3
1,336,737	-		Pf1N1B4_1186	0.13	-0.1
1,336,784	+		Pf1N1B4_1186	0.16	-1.9
1,336,976	+		Pf1N1B4_1186	0.27	+0.2
1,337,199	+		Pf1N1B4_1186	0.40	+0.5
1,337,199	+		Pf1N1B4_1186	0.40	+0.2
1,337,200	-		Pf1N1B4_1186	0.41	-1.8
1,337,208	+		Pf1N1B4_1186	0.41	-0.5
1,337,209	-		Pf1N1B4_1186	0.41	-1.3
1,337,209	-		Pf1N1B4_1186	0.41	-1.9
1,337,228	+		Pf1N1B4_1186	0.42	-0.8
1,337,228	+		Pf1N1B4_1186	0.42	-0.7
1,337,228	+		Pf1N1B4_1186	0.42	-0.4
1,337,229	-		Pf1N1B4_1186	0.42	-0.1
1,337,229	-		Pf1N1B4_1186	0.42	+0.5
1,337,229	-		Pf1N1B4_1186	0.42	+0.5