Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000721 and ABIE53_000722 overlap by 4 nucleotides ABIE53_000722 and ABIE53_000723 overlap by 1 nucleotides ABIE53_000723 and ABIE53_000724 are separated by 122 nucleotides
ABIE53_000721: ABIE53_000721 - lipopolysaccharide export system protein LptC, at 774,808 to 775,419
_000721
ABIE53_000722: ABIE53_000722 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase), at 775,416 to 775,976
_000722
ABIE53_000723: ABIE53_000723 - arabinose-5-phosphate isomerase, at 775,976 to 776,959
_000723
ABIE53_000724: ABIE53_000724 - CPA2 family monovalent cation:H+ antiporter-2, at 777,082 to 779,136
_000724
Position (kb) 775
776
777 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 775.472 kb on - strand, within ABIE53_000722 at 775.472 kb on - strand, within ABIE53_000722 at 775.472 kb on - strand, within ABIE53_000722 at 775.472 kb on - strand, within ABIE53_000722 at 775.472 kb on - strand, within ABIE53_000722 at 775.472 kb on - strand, within ABIE53_000722 at 775.472 kb on - strand, within ABIE53_000722 at 775.472 kb on - strand, within ABIE53_000722 at 775.492 kb on - strand, within ABIE53_000722 at 775.724 kb on - strand, within ABIE53_000722 at 776.220 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.353 kb on - strand, within ABIE53_000723 at 776.969 kb on - strand at 776.969 kb on - strand at 776.969 kb on - strand at 776.969 kb on - strand at 776.969 kb on - strand at 777.035 kb on + strand at 777.045 kb on + strand at 777.045 kb on + strand at 777.045 kb on + strand at 777.045 kb on + strand at 777.045 kb on + strand at 777.046 kb on - strand at 777.046 kb on - strand at 777.046 kb on - strand at 777.046 kb on - strand at 777.046 kb on - strand at 777.046 kb on - strand at 777.046 kb on - strand at 777.046 kb on - strand at 777.047 kb on + strand at 777.047 kb on + strand at 777.048 kb on - strand at 777.114 kb on + strand at 777.114 kb on + strand at 777.115 kb on - strand at 777.115 kb on - strand at 777.115 kb on - strand at 777.230 kb on - strand at 777.230 kb on - strand at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.468 kb on + strand, within ABIE53_000724 at 777.469 kb on - strand, within ABIE53_000724 at 777.469 kb on - strand, within ABIE53_000724 at 777.469 kb on - strand, within ABIE53_000724 at 777.469 kb on - strand, within ABIE53_000724 at 777.469 kb on - strand, within ABIE53_000724 at 777.469 kb on - strand, within ABIE53_000724 at 777.582 kb on + strand, within ABIE53_000724 at 777.582 kb on + strand, within ABIE53_000724 at 777.583 kb on - strand, within ABIE53_000724 at 777.583 kb on - strand, within ABIE53_000724 at 777.583 kb on - strand, within ABIE53_000724 at 777.876 kb on + strand, within ABIE53_000724 at 777.877 kb on - strand, within ABIE53_000724 at 777.877 kb on - strand, within ABIE53_000724 at 777.877 kb on - strand, within ABIE53_000724
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days remove 775,472 - ABIE53_000722 0.10 -1.3 775,472 - ABIE53_000722 0.10 -2.4 775,472 - ABIE53_000722 0.10 -3.4 775,472 - ABIE53_000722 0.10 -0.4 775,472 - ABIE53_000722 0.10 -2.6 775,472 - ABIE53_000722 0.10 -2.7 775,472 - ABIE53_000722 0.10 +0.5 775,472 - ABIE53_000722 0.10 -0.2 775,492 - ABIE53_000722 0.14 +0.5 775,724 - ABIE53_000722 0.55 -2.0 776,220 - ABIE53_000723 0.25 -3.9 776,353 - ABIE53_000723 0.38 -1.1 776,353 - ABIE53_000723 0.38 +0.5 776,353 - ABIE53_000723 0.38 +0.1 776,353 - ABIE53_000723 0.38 -1.2 776,353 - ABIE53_000723 0.38 -0.1 776,353 - ABIE53_000723 0.38 -1.1 776,353 - ABIE53_000723 0.38 -0.5 776,353 - ABIE53_000723 0.38 -1.4 776,353 - ABIE53_000723 0.38 -2.6 776,353 - ABIE53_000723 0.38 -0.6 776,353 - ABIE53_000723 0.38 +1.5 776,353 - ABIE53_000723 0.38 -2.3 776,353 - ABIE53_000723 0.38 +0.6 776,353 - ABIE53_000723 0.38 +0.0 776,969 - -1.7 776,969 - -0.1 776,969 - +0.7 776,969 - +1.4 776,969 - +2.0 777,035 + -1.3 777,045 + -1.3 777,045 + -0.7 777,045 + -0.2 777,045 + -0.1 777,045 + -2.1 777,046 - +3.3 777,046 - +0.1 777,046 - +0.7 777,046 - -1.7 777,046 - -1.9 777,046 - -0.5 777,046 - -0.5 777,046 - +0.5 777,047 + -2.3 777,047 + -2.7 777,048 - +1.3 777,114 + +1.0 777,114 + +1.5 777,115 - +0.5 777,115 - -0.6 777,115 - +1.9 777,230 - +1.7 777,230 - +0.2 777,468 + ABIE53_000724 0.19 +1.5 777,468 + ABIE53_000724 0.19 -1.1 777,468 + ABIE53_000724 0.19 +1.2 777,468 + ABIE53_000724 0.19 -0.1 777,468 + ABIE53_000724 0.19 -2.3 777,468 + ABIE53_000724 0.19 -1.6 777,468 + ABIE53_000724 0.19 +1.1 777,468 + ABIE53_000724 0.19 +0.2 777,468 + ABIE53_000724 0.19 -0.1 777,468 + ABIE53_000724 0.19 -2.0 777,468 + ABIE53_000724 0.19 +1.7 777,468 + ABIE53_000724 0.19 +0.2 777,468 + ABIE53_000724 0.19 -0.3 777,469 - ABIE53_000724 0.19 +1.3 777,469 - ABIE53_000724 0.19 -0.9 777,469 - ABIE53_000724 0.19 +0.9 777,469 - ABIE53_000724 0.19 +0.7 777,469 - ABIE53_000724 0.19 +0.3 777,469 - ABIE53_000724 0.19 -1.1 777,582 + ABIE53_000724 0.24 +0.2 777,582 + ABIE53_000724 0.24 +3.0 777,583 - ABIE53_000724 0.24 -0.1 777,583 - ABIE53_000724 0.24 -0.1 777,583 - ABIE53_000724 0.24 -0.8 777,876 + ABIE53_000724 0.39 -0.7 777,877 - ABIE53_000724 0.39 +2.2 777,877 - ABIE53_000724 0.39 -2.2 777,877 - ABIE53_000724 0.39 +4.9
Or see this region's nucleotide sequence