Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3248

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
3,637,492	-		Pf1N1B4_3247	0.49	+0.5
3,637,492	-		Pf1N1B4_3247	0.49	-0.7
3,637,600	-				+1.3
3,637,786	-		Pf1N1B4_3247	0.75	+0.8
3,638,154	-				-2.0
3,638,210	-				-0.9
3,638,249	+				-1.6
3,638,249	+				-1.9
3,638,299	+				+0.5
3,638,337	-				-2.5
3,638,415	+		Pf1N1B4_3248	0.11	-0.9
3,638,415	+		Pf1N1B4_3248	0.11	-1.7
3,638,416	-		Pf1N1B4_3248	0.12	-1.1
3,638,487	+		Pf1N1B4_3248	0.23	+0.3
3,638,487	+		Pf1N1B4_3248	0.23	-0.2
3,638,488	-		Pf1N1B4_3248	0.23	-0.9
3,638,504	+		Pf1N1B4_3248	0.25	-1.5
3,638,687	+		Pf1N1B4_3248	0.54	-2.5
3,638,687	+		Pf1N1B4_3248	0.54	-1.1
3,638,687	+		Pf1N1B4_3248	0.54	+0.3
3,638,688	-		Pf1N1B4_3248	0.55	-0.5
3,638,688	-		Pf1N1B4_3248	0.55	+0.5
3,638,850	+		Pf1N1B4_3248	0.80	+0.1
3,638,850	+		Pf1N1B4_3248	0.80	-1.9
3,638,851	-		Pf1N1B4_3248	0.80	+2.5
3,638,851	-		Pf1N1B4_3248	0.80	-0.5
3,638,942	+				-2.3
3,638,987	+				-0.1
3,638,988	-				-0.4
3,639,050	+				-0.9
3,639,050	+				+0.5
3,639,050	+				+0.7
3,639,051	-				-0.1
3,639,064	+				-1.9
3,639,064	+				-1.3
3,639,064	+				+0.7
3,639,064	+				-1.1
3,639,064	+				-0.5
3,639,064	+				-0.1
3,639,064	+				+0.3
3,639,064	+				-0.5
3,639,065	-				-0.5
3,639,065	-				-0.3
3,639,065	-				+0.7
3,639,065	-				-0.0
3,639,065	-				-0.3
3,639,065	-				-0.1
3,639,066	+				+1.1
3,639,066	+				-0.5
3,639,066	+				+2.2
3,639,066	+				+1.2
3,639,066	+				+0.5
3,639,068	+				-1.3
3,639,068	+				+1.1
3,639,068	+				-1.4
3,639,068	+				-0.3
3,639,068	+				-1.7
3,639,068	+				+1.7
3,639,068	+				-0.7
3,639,068	+				+2.6
3,639,068	+				-1.2
3,639,068	+				-0.5
3,639,068	+				+1.6
3,639,068	+				-0.7
3,639,068	+				-0.5
3,639,068	+				+0.2
3,639,068	+				-0.3
3,639,068	+				+0.7
3,639,068	+				+0.1
3,639,068	+				-0.5
3,639,069	-				-0.3
3,639,069	-				-0.1
3,639,069	-				+0.5
3,639,069	-				-0.9
3,639,069	-				+0.7
3,639,072	+				+2.5
3,639,072	+				-1.9
3,639,072	+				+1.0
3,639,072	+				-1.3
3,639,072	+				-0.1
3,639,072	+				-1.9
3,639,072	+				+0.1
3,639,072	+				-0.5
3,639,072	+				+0.7
3,639,072	+				-1.0
3,639,072	+				+0.2
3,639,073	-				-0.5
3,639,073	-				+2.5
3,639,073	-				-2.2
3,639,073	-				+0.7
3,639,073	-				-2.3
3,639,073	-				+2.0
3,639,089	+				-2.1
3,639,089	+				-0.5
3,639,089	+				+0.5
3,639,089	+				+0.2
3,639,090	-				+1.2
3,639,090	-				+0.5
3,639,102	-				+0.5
3,639,105	+				+0.2
3,639,105	+				+0.5
3,639,105	+				-1.9
3,639,105	+				+1.0
3,639,105	+				-0.9
3,639,106	-				+0.8
3,639,245	+		Pf1N1B4_3249	0.12	+1.8
3,639,245	+		Pf1N1B4_3249	0.12	+0.1
3,639,245	+		Pf1N1B4_3249	0.12	-0.0
3,639,246	-		Pf1N1B4_3249	0.12	-0.7
3,639,290	+		Pf1N1B4_3249	0.17	-0.1
3,639,290	+		Pf1N1B4_3249	0.17	-1.3
3,639,290	+				-1.5
3,639,382	-		Pf1N1B4_3249	0.28	-0.9
3,639,385	-		Pf1N1B4_3249	0.28	+0.3
3,639,385	-		Pf1N1B4_3249	0.28	-2.1
3,639,437	+		Pf1N1B4_3249	0.34	+1.5
3,639,438	-		Pf1N1B4_3249	0.34	+0.5
3,639,483	+		Pf1N1B4_3249	0.39	-1.4
3,639,484	-		Pf1N1B4_3249	0.39	-0.4
3,639,484	-		Pf1N1B4_3249	0.39	-1.5
3,639,653	+		Pf1N1B4_3249	0.58	+0.4
3,639,654	-		Pf1N1B4_3249	0.58	+1.3
3,639,654	-		Pf1N1B4_3249	0.58	+1.3
3,639,887	+		Pf1N1B4_3249	0.85	+0.2
3,639,887	+		Pf1N1B4_3249	0.85	+0.4
3,639,915	-		Pf1N1B4_3249	0.88	-1.8
3,639,915	-		Pf1N1B4_3249	0.88	-0.1
3,639,920	+		Pf1N1B4_3249	0.88	-0.6
3,639,921	-		Pf1N1B4_3249	0.89	+0.4