Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004792

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004791 and ABIE53_004792 are separated by 40 nucleotidesABIE53_004792 and ABIE53_004793 are separated by 16 nucleotidesABIE53_004793 and ABIE53_004794 are separated by 10 nucleotides ABIE53_004791: ABIE53_004791 - non-heme chloroperoxidase, at 997,737 to 998,726 _004791 ABIE53_004792: ABIE53_004792 - acetoacetate decarboxylase, at 998,767 to 999,546 _004792 ABIE53_004793: ABIE53_004793 - 3-hydroxybutyrate dehydrogenase, at 999,563 to 1,000,345 _004793 ABIE53_004794: ABIE53_004794 - NTE family protein, at 1,000,356 to 1,001,555 _004794 Position (kb) 998 999 1000Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 998.003 kb on + strand, within ABIE53_004791at 998.004 kb on - strand, within ABIE53_004791at 998.004 kb on - strand, within ABIE53_004791at 998.212 kb on - strand, within ABIE53_004791at 998.228 kb on + strand, within ABIE53_004791at 998.228 kb on + strand, within ABIE53_004791at 998.283 kb on - strand, within ABIE53_004791at 998.308 kb on + strand, within ABIE53_004791at 998.309 kb on - strand, within ABIE53_004791at 998.312 kb on + strand, within ABIE53_004791at 998.394 kb on + strand, within ABIE53_004791at 998.395 kb on - strand, within ABIE53_004791at 998.646 kb on + strandat 998.860 kb on + strand, within ABIE53_004792at 998.861 kb on - strand, within ABIE53_004792at 998.868 kb on + strand, within ABIE53_004792at 998.869 kb on - strand, within ABIE53_004792at 998.869 kb on - strand, within ABIE53_004792at 998.989 kb on + strand, within ABIE53_004792at 998.990 kb on - strand, within ABIE53_004792at 998.992 kb on - strand, within ABIE53_004792at 999.046 kb on + strand, within ABIE53_004792at 999.046 kb on + strand, within ABIE53_004792at 999.047 kb on - strand, within ABIE53_004792at 999.214 kb on + strand, within ABIE53_004792at 999.215 kb on - strand, within ABIE53_004792at 999.215 kb on - strand, within ABIE53_004792at 999.216 kb on + strand, within ABIE53_004792at 999.216 kb on + strand, within ABIE53_004792at 999.216 kb on + strand, within ABIE53_004792at 999.216 kb on + strand, within ABIE53_004792at 999.217 kb on - strand, within ABIE53_004792at 999.217 kb on - strand, within ABIE53_004792at 999.217 kb on - strand, within ABIE53_004792at 999.217 kb on - strand, within ABIE53_004792at 999.217 kb on - strand, within ABIE53_004792at 999.220 kb on + strand, within ABIE53_004792at 999.221 kb on - strand, within ABIE53_004792at 999.274 kb on + strand, within ABIE53_004792at 999.275 kb on - strand, within ABIE53_004792at 999.318 kb on - strand, within ABIE53_004792at 999.502 kb on + strandat 999.544 kb on + strandat 999.544 kb on + strandat 999.545 kb on - strandat 999.559 kb on + strandat 999.560 kb on + strandat 999.560 kb on + strandat 999.561 kb on - strandat 999.561 kb on - strandat 999.561 kb on - strandat 999.561 kb on - strandat 999.561 kb on - strandat 999.561 kb on - strandat 999.562 kb on + strandat 999.562 kb on + strandat 999.562 kb on + strandat 999.562 kb on + strandat 999.563 kb on - strandat 999.563 kb on - strandat 999.563 kb on - strandat 999.563 kb on - strandat 999.563 kb on - strandat 999.816 kb on + strand, within ABIE53_004793at 999.816 kb on + strand, within ABIE53_004793at 999.816 kb on + strand, within ABIE53_004793at 999.816 kb on + strand, within ABIE53_004793at 999.817 kb on - strand, within ABIE53_004793at 999.817 kb on - strand, within ABIE53_004793at 999.817 kb on - strand, within ABIE53_004793at 999.863 kb on + strand, within ABIE53_004793at 999.863 kb on + strand, within ABIE53_004793at 999.895 kb on + strand, within ABIE53_004793at 999.923 kb on - strand, within ABIE53_004793at 999.925 kb on + strand, within ABIE53_004793at 999.925 kb on + strand, within ABIE53_004793at 999.926 kb on - strand, within ABIE53_004793at 999.926 kb on - strand, within ABIE53_004793at 999.943 kb on + strand, within ABIE53_004793at 999.943 kb on + strand, within ABIE53_004793at 999.944 kb on - strand, within ABIE53_004793at 999.944 kb on - strand, within ABIE53_004793at 999.947 kb on + strand, within ABIE53_004793at 999.947 kb on + strand, within ABIE53_004793at 999.947 kb on + strand, within ABIE53_004793at 999.947 kb on + strand, within ABIE53_004793at 999.948 kb on - strand, within ABIE53_004793at 999.948 kb on - strand, within ABIE53_004793at 999.948 kb on - strand, within ABIE53_004793at 999.948 kb on - strand, within ABIE53_004793at 999.948 kb on - strand, within ABIE53_004793at 999.948 kb on - strand, within ABIE53_004793at 999.948 kb on - strand, within ABIE53_004793at 999.977 kb on + strand, within ABIE53_004793at 999.977 kb on + strand, within ABIE53_004793at 999.977 kb on + strand, within ABIE53_004793at 1000.016 kb on - strand, within ABIE53_004793at 1000.025 kb on + strand, within ABIE53_004793at 1000.224 kb on + strand, within ABIE53_004793at 1000.224 kb on + strand, within ABIE53_004793at 1000.225 kb on - strand, within ABIE53_004793at 1000.225 kb on - strand, within ABIE53_004793at 1000.344 kb on - strandat 1000.474 kb on + strandat 1000.475 kb on - strandat 1000.476 kb on + strand, within ABIE53_004794

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
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998,003 + ABIE53_004791 0.27 +2.2
998,004 - ABIE53_004791 0.27 -1.4
998,004 - ABIE53_004791 0.27 -0.9
998,212 - ABIE53_004791 0.48 +1.1
998,228 + ABIE53_004791 0.50 -2.2
998,228 + ABIE53_004791 0.50 +1.0
998,283 - ABIE53_004791 0.55 -1.2
998,308 + ABIE53_004791 0.58 -1.9
998,309 - ABIE53_004791 0.58 +0.6
998,312 + ABIE53_004791 0.58 -0.6
998,394 + ABIE53_004791 0.66 +1.7
998,395 - ABIE53_004791 0.66 -1.9
998,646 + -0.2
998,860 + ABIE53_004792 0.12 -0.3
998,861 - ABIE53_004792 0.12 -0.9
998,868 + ABIE53_004792 0.13 +0.3
998,869 - ABIE53_004792 0.13 +2.4
998,869 - ABIE53_004792 0.13 -1.3
998,989 + ABIE53_004792 0.28 -0.4
998,990 - ABIE53_004792 0.29 +0.4
998,992 - ABIE53_004792 0.29 +3.7
999,046 + ABIE53_004792 0.36 -1.7
999,046 + ABIE53_004792 0.36 +0.0
999,047 - ABIE53_004792 0.36 +0.7
999,214 + ABIE53_004792 0.57 +2.1
999,215 - ABIE53_004792 0.57 -1.0
999,215 - ABIE53_004792 0.57 -0.9
999,216 + ABIE53_004792 0.58 +0.8
999,216 + ABIE53_004792 0.58 +0.6
999,216 + ABIE53_004792 0.58 -0.4
999,216 + ABIE53_004792 0.58 +0.2
999,217 - ABIE53_004792 0.58 -0.2
999,217 - ABIE53_004792 0.58 +0.6
999,217 - ABIE53_004792 0.58 +0.3
999,217 - ABIE53_004792 0.58 +1.0
999,217 - ABIE53_004792 0.58 -1.4
999,220 + ABIE53_004792 0.58 +0.9
999,221 - ABIE53_004792 0.58 -0.7
999,274 + ABIE53_004792 0.65 -0.9
999,275 - ABIE53_004792 0.65 +1.9
999,318 - ABIE53_004792 0.71 -1.2
999,502 + +0.9
999,544 + -0.6
999,544 + +0.6
999,545 - +0.5
999,559 + -1.4
999,560 + -1.1
999,560 + -0.4
999,561 - -1.8
999,561 - +1.1
999,561 - -1.0
999,561 - -0.9
999,561 - -3.4
999,561 - +0.9
999,562 + +0.6
999,562 + -0.1
999,562 + -0.2
999,562 + -0.5
999,563 - -0.2
999,563 - +0.2
999,563 - -0.4
999,563 - -0.2
999,563 - -0.2
999,816 + ABIE53_004793 0.32 +0.1
999,816 + ABIE53_004793 0.32 -1.5
999,816 + ABIE53_004793 0.32 +1.8
999,816 + ABIE53_004793 0.32 +0.6
999,817 - ABIE53_004793 0.32 +1.1
999,817 - ABIE53_004793 0.32 +0.0
999,817 - ABIE53_004793 0.32 +0.4
999,863 + ABIE53_004793 0.38 -1.7
999,863 + ABIE53_004793 0.38 +2.1
999,895 + ABIE53_004793 0.42 -1.2
999,923 - ABIE53_004793 0.46 +0.1
999,925 + ABIE53_004793 0.46 +0.2
999,925 + ABIE53_004793 0.46 +0.6
999,926 - ABIE53_004793 0.46 +1.1
999,926 - ABIE53_004793 0.46 -1.0
999,943 + ABIE53_004793 0.49 +0.2
999,943 + ABIE53_004793 0.49 +0.1
999,944 - ABIE53_004793 0.49 -1.4
999,944 - ABIE53_004793 0.49 +0.9
999,947 + ABIE53_004793 0.49 +0.7
999,947 + ABIE53_004793 0.49 -0.4
999,947 + ABIE53_004793 0.49 -0.1
999,947 + ABIE53_004793 0.49 +0.0
999,948 - ABIE53_004793 0.49 -2.0
999,948 - ABIE53_004793 0.49 -0.3
999,948 - ABIE53_004793 0.49 -1.2
999,948 - ABIE53_004793 0.49 -0.0
999,948 - ABIE53_004793 0.49 +1.1
999,948 - ABIE53_004793 0.49 +2.7
999,948 - ABIE53_004793 0.49 +0.7
999,977 + ABIE53_004793 0.53 +1.1
999,977 + ABIE53_004793 0.53 -2.2
999,977 + ABIE53_004793 0.53 -0.1
1,000,016 - ABIE53_004793 0.58 +0.9
1,000,025 + ABIE53_004793 0.59 +0.7
1,000,224 + ABIE53_004793 0.84 +1.7
1,000,224 + ABIE53_004793 0.84 +2.6
1,000,225 - ABIE53_004793 0.85 -0.6
1,000,225 - ABIE53_004793 0.85 +1.5
1,000,344 - +1.1
1,000,474 + -0.8
1,000,475 - +0.4
1,000,476 + ABIE53_004794 0.10 -0.1

Or see this region's nucleotide sequence