Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5751 and Pf1N1B4_5752 are separated by 154 nucleotides Pf1N1B4_5752 and Pf1N1B4_5753 are separated by 75 nucleotides Pf1N1B4_5753 and Pf1N1B4_5754 are separated by 28 nucleotides Pf1N1B4_5754 and Pf1N1B4_5755 overlap by 7 nucleotides
Pf1N1B4_5751 - Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR, at 191,511 to 193,040
_5751
Pf1N1B4_5752 - Nitric oxide-dependent regulator DnrN or NorA, at 193,195 to 193,869
_5752
Pf1N1B4_5753 - putative membrane protein, at 193,945 to 194,382
_5753
Pf1N1B4_5754 - NnrS protein involved in response to NO, at 194,411 to 195,073
_5754
Pf1N1B4_5755 - NnrS protein involved in response to NO, at 195,067 to 195,600
_5755
Position (kb) 193
194
195 Strain fitness (log2 ratio) -2
-1
0
1
2 at 192.952 kb on + strand at 192.953 kb on - strand at 193.044 kb on - strand at 193.044 kb on - strand at 193.047 kb on - strand at 193.047 kb on - strand at 193.058 kb on - strand at 193.755 kb on + strand, within Pf1N1B4_5752 at 193.942 kb on + strand at 194.079 kb on - strand, within Pf1N1B4_5753 at 194.079 kb on - strand, within Pf1N1B4_5753 at 194.199 kb on - strand, within Pf1N1B4_5753 at 194.272 kb on + strand at 194.470 kb on - strand at 194.911 kb on - strand, within Pf1N1B4_5754 at 194.912 kb on + strand, within Pf1N1B4_5754 at 194.913 kb on - strand, within Pf1N1B4_5754 at 195.171 kb on + strand, within Pf1N1B4_5755 at 195.172 kb on - strand, within Pf1N1B4_5755 at 195.172 kb on - strand, within Pf1N1B4_5755 at 195.172 kb on - strand, within Pf1N1B4_5755 at 195.172 kb on - strand, within Pf1N1B4_5755
Per-strain Table
Position Strand Gene LocusTag Fraction Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 remove 192,952 + -1.6 192,953 - -2.1 193,044 - -1.7 193,044 - -0.4 193,047 - -0.9 193,047 - -1.2 193,058 - +0.1 193,755 + Pf1N1B4_5752 0.83 +1.0 193,942 + -0.4 194,079 - Pf1N1B4_5753 0.31 +0.6 194,079 - Pf1N1B4_5753 0.31 +0.7 194,199 - Pf1N1B4_5753 0.58 +2.0 194,272 + +1.6 194,470 - -0.4 194,911 - Pf1N1B4_5754 0.75 -0.6 194,912 + Pf1N1B4_5754 0.76 -1.6 194,913 - Pf1N1B4_5754 0.76 -1.2 195,171 + Pf1N1B4_5755 0.19 -0.9 195,172 - Pf1N1B4_5755 0.20 -0.4 195,172 - Pf1N1B4_5755 0.20 -1.2 195,172 - Pf1N1B4_5755 0.20 +0.6 195,172 - Pf1N1B4_5755 0.20 -1.9
Or see this region's nucleotide sequence