Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3672

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1
4,076,321	+		Pf1N1B4_3671	0.11	+0.3
4,076,325	+				+0.6
4,076,325	+		Pf1N1B4_3671	0.12	-0.4
4,076,325	+		Pf1N1B4_3671	0.12	+0.2
4,076,325	+		Pf1N1B4_3671	0.12	-1.9
4,076,325	+		Pf1N1B4_3671	0.12	+0.9
4,076,325	+		Pf1N1B4_3671	0.12	+0.3
4,076,325	+		Pf1N1B4_3671	0.12	-0.6
4,076,326	-		Pf1N1B4_3671	0.12	+1.6
4,076,326	-		Pf1N1B4_3671	0.12	-0.4
4,076,326	-		Pf1N1B4_3671	0.12	-0.5
4,076,326	-		Pf1N1B4_3671	0.12	+0.6
4,076,501	+		Pf1N1B4_3671	0.32	-0.0
4,076,502	-		Pf1N1B4_3671	0.33	-0.3
4,076,582	+		Pf1N1B4_3671	0.42	+0.6
4,076,582	+		Pf1N1B4_3671	0.42	-1.7
4,076,582	+		Pf1N1B4_3671	0.42	+0.9
4,076,582	+		Pf1N1B4_3671	0.42	+0.6
4,076,583	-		Pf1N1B4_3671	0.42	+0.3
4,076,599	+		Pf1N1B4_3671	0.44	-0.1
4,076,599	+				+1.0
4,076,599	+		Pf1N1B4_3671	0.44	+0.0
4,076,599	+		Pf1N1B4_3671	0.44	+0.1
4,076,600	-		Pf1N1B4_3671	0.44	-0.4
4,076,699	+		Pf1N1B4_3671	0.56	-0.6
4,076,699	+		Pf1N1B4_3671	0.56	-0.1
4,076,699	+		Pf1N1B4_3671	0.56	-0.4
4,076,699	+		Pf1N1B4_3671	0.56	-0.4
4,076,700	-		Pf1N1B4_3671	0.56	-0.2
4,076,700	-		Pf1N1B4_3671	0.56	+0.0
4,076,700	-		Pf1N1B4_3671	0.56	+1.9
4,076,700	-		Pf1N1B4_3671	0.56	-0.3
4,076,700	-		Pf1N1B4_3671	0.56	-1.6
4,076,883	+		Pf1N1B4_3671	0.77	-1.2
4,076,887	+		Pf1N1B4_3671	0.78	-0.5
4,076,887	+		Pf1N1B4_3671	0.78	-1.6
4,076,887	+		Pf1N1B4_3671	0.78	+1.2
4,076,887	+		Pf1N1B4_3671	0.78	-1.4
4,076,887	+		Pf1N1B4_3671	0.78	-1.6
4,076,888	-		Pf1N1B4_3671	0.78	-2.0
4,077,094	-				+0.2
4,077,124	+				-0.2
4,077,125	-				+0.0
4,077,150	-				+0.1
4,077,197	+				+0.2
4,077,197	+				+1.3
4,077,198	-				+0.3
4,077,198	-				-0.9
4,077,201	-				-1.4
4,077,203	+				+0.5
4,077,204	-				-1.1
4,077,204	-				-0.7
4,077,204	-				+0.2
4,077,204	-				-0.2
4,077,235	+				+1.2
4,077,236	-				-1.4
4,077,236	-				-1.1
4,077,236	-				-0.2
4,077,236	-				-0.4
4,077,256	+				+1.8
4,077,257	-				+1.6
4,077,257	-				+1.1
4,077,257	-				-1.2
4,077,257	-				-0.5
4,077,257	-				-1.4
4,077,257	-				+0.4
4,077,299	-				-1.4
4,077,392	-		Pf1N1B4_3672	0.35	-1.2
4,077,465	+		Pf1N1B4_3672	0.58	-0.6
4,077,465	+		Pf1N1B4_3672	0.58	+0.3
4,077,465	+		Pf1N1B4_3672	0.58	-1.2
4,077,465	+		Pf1N1B4_3672	0.58	-0.9
4,077,465	+		Pf1N1B4_3672	0.58	-0.4
4,077,465	+		Pf1N1B4_3672	0.58	+0.7
4,077,465	+		Pf1N1B4_3672	0.58	-0.4
4,077,466	-		Pf1N1B4_3672	0.59	-0.6
4,077,526	+		Pf1N1B4_3672	0.78	-1.6
4,077,526	+		Pf1N1B4_3672	0.78	-1.6
4,077,527	-		Pf1N1B4_3672	0.78	-0.4
4,077,527	-		Pf1N1B4_3672	0.78	+1.2
4,077,527	-		Pf1N1B4_3672	0.78	-1.0
4,077,527	-		Pf1N1B4_3672	0.78	-0.5
4,077,527	-		Pf1N1B4_3672	0.78	-1.0
4,077,747	+				-0.5
4,077,747	+				-0.5
4,077,748	-				-0.8
4,077,765	-				+0.2
4,077,783	+		Pf1N1B4_3673	0.12	-2.1
4,077,783	+		Pf1N1B4_3673	0.12	-0.4
4,077,783	+		Pf1N1B4_3673	0.12	-0.3
4,077,786	+				+0.6
4,077,786	+		Pf1N1B4_3673	0.12	+0.8
4,077,843	+		Pf1N1B4_3673	0.15	-1.2
4,077,843	+				-0.4
4,077,843	+		Pf1N1B4_3673	0.15	-2.3
4,077,843	+				+0.6
4,077,843	+		Pf1N1B4_3673	0.15	+0.0
4,077,844	-		Pf1N1B4_3673	0.15	-1.2
4,077,844	-		Pf1N1B4_3673	0.15	+0.3
4,077,844	-		Pf1N1B4_3673	0.15	-2.1
4,077,844	-		Pf1N1B4_3673	0.15	+0.0
4,077,844	-		Pf1N1B4_3673	0.15	-0.3
4,077,869	+				+1.6
4,077,870	-		Pf1N1B4_3673	0.17	+0.6
4,077,912	+		Pf1N1B4_3673	0.19	-1.0
4,077,913	-		Pf1N1B4_3673	0.19	-1.2
4,077,987	+		Pf1N1B4_3673	0.24	-0.1
4,077,987	+		Pf1N1B4_3673	0.24	+0.1
4,077,988	-		Pf1N1B4_3673	0.24	+0.3
4,077,988	-		Pf1N1B4_3673	0.24	+0.6
4,077,988	-		Pf1N1B4_3673	0.24	-1.2
4,078,179	+		Pf1N1B4_3673	0.35	-1.9
4,078,179	+		Pf1N1B4_3673	0.35	+0.0
4,078,179	+		Pf1N1B4_3673	0.35	+0.6
4,078,179	+		Pf1N1B4_3673	0.35	-1.6
4,078,179	+		Pf1N1B4_3673	0.35	+0.3
4,078,179	+		Pf1N1B4_3673	0.35	-0.3
4,078,179	+		Pf1N1B4_3673	0.35	-2.2
4,078,179	+		Pf1N1B4_3673	0.35	-0.7
4,078,179	+				-0.1
4,078,180	-		Pf1N1B4_3673	0.36	+0.1
4,078,180	-		Pf1N1B4_3673	0.36	-2.2
4,078,334	+		Pf1N1B4_3673	0.45	+1.6
4,078,494	+		Pf1N1B4_3673	0.54	+2.2
4,078,494	+		Pf1N1B4_3673	0.54	-2.5
4,078,494	+		Pf1N1B4_3673	0.54	+0.1
4,078,494	+		Pf1N1B4_3673	0.54	+0.3
4,078,494	+		Pf1N1B4_3673	0.54	+0.3
4,078,495	-		Pf1N1B4_3673	0.54	-0.2
4,078,495	-		Pf1N1B4_3673	0.54	+0.9
4,078,495	-		Pf1N1B4_3673	0.54	-2.2
4,078,515	+		Pf1N1B4_3673	0.56	-0.4
4,078,515	+		Pf1N1B4_3673	0.56	-1.1
4,078,516	-		Pf1N1B4_3673	0.56	+0.9
4,078,521	+				-0.7
4,078,521	+		Pf1N1B4_3673	0.56	-0.6
4,078,521	+		Pf1N1B4_3673	0.56	-1.4
4,078,521	+		Pf1N1B4_3673	0.56	-0.1
4,078,522	-		Pf1N1B4_3673	0.56	-0.7
4,078,522	-		Pf1N1B4_3673	0.56	-0.8
4,078,571	+		Pf1N1B4_3673	0.59	-1.4
4,078,572	-		Pf1N1B4_3673	0.59	+0.1
4,078,583	+		Pf1N1B4_3673	0.60	-0.0
4,078,583	+		Pf1N1B4_3673	0.60	-1.1
4,078,584	-		Pf1N1B4_3673	0.60	-2.9