Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3519

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1
3,926,606	+		Pf1N1B4_3518	0.82	-1.2
3,926,607	-		Pf1N1B4_3518	0.82	-1.7
3,926,638	+		Pf1N1B4_3518	0.86	-0.4
3,926,638	+		Pf1N1B4_3518	0.86	-1.9
3,926,639	-		Pf1N1B4_3518	0.86	-0.7
3,926,639	-		Pf1N1B4_3518	0.86	-1.4
3,926,639	-		Pf1N1B4_3518	0.86	-0.2
3,926,639	-		Pf1N1B4_3518	0.86	-1.7
3,926,639	-		Pf1N1B4_3518	0.86	+0.6
3,926,708	+				+1.6
3,926,745	+				-0.2
3,926,767	+				-1.9
3,926,767	+				-0.7
3,926,767	+				-0.8
3,926,767	+				-0.1
3,926,767	+				+0.6
3,926,767	+				+0.7
3,926,767	+				+0.2
3,926,767	+				+0.6
3,926,767	+				-1.1
3,926,768	-				+1.9
3,926,768	-				-0.5
3,926,771	+				+1.2
3,926,781	+				-1.0
3,926,781	+				-0.0
3,926,781	+				+2.6
3,926,781	+				+1.6
3,926,781	+				+0.3
3,926,782	-				+0.8
3,926,782	-				+0.0
3,926,782	-				+1.2
3,926,782	-				-0.7
3,926,828	+				-1.9
3,926,828	+				-0.3
3,926,828	+				-0.9
3,926,828	+				+0.1
3,926,867	+		Pf1N1B4_3519	0.19	+2.3
3,926,867	+		Pf1N1B4_3519	0.19	-1.9
3,926,867	+				+0.3
3,926,919	+		Pf1N1B4_3519	0.34	+1.2
3,926,919	+		Pf1N1B4_3519	0.34	-0.2
3,926,919	+		Pf1N1B4_3519	0.34	+1.6
3,926,919	+		Pf1N1B4_3519	0.34	+0.3
3,926,920	-		Pf1N1B4_3519	0.34	+0.5
3,926,931	-		Pf1N1B4_3519	0.37	-0.7
3,926,942	+		Pf1N1B4_3519	0.41	-2.4
3,927,144	+				-2.1
3,927,159	-				-0.5
3,927,286	+		Pf1N1B4_3520	0.31	-0.4
3,927,286	+		Pf1N1B4_3520	0.31	+0.6
3,927,286	+		Pf1N1B4_3520	0.31	+0.7
3,927,286	+		Pf1N1B4_3520	0.31	+0.0
3,927,286	+		Pf1N1B4_3520	0.31	-0.3
3,927,286	+		Pf1N1B4_3520	0.31	+0.9
3,927,287	-		Pf1N1B4_3520	0.31	+0.9
3,927,419	+		Pf1N1B4_3520	0.60	-0.6
3,927,478	+		Pf1N1B4_3520	0.74	-1.0
3,927,479	-		Pf1N1B4_3520	0.74	-2.1
3,927,479	-		Pf1N1B4_3520	0.74	+0.0
3,927,479	-		Pf1N1B4_3520	0.74	-1.8
3,927,639	+				-0.3
3,927,640	-				-1.3
3,927,727	-				+0.5
3,927,828	+				+0.6
3,927,828	+				+1.0
3,927,828	+				-2.2
3,927,828	+				-2.6
3,927,829	-				-1.2
3,927,829	-				-0.4
3,927,829	-				-1.3