Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3515

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1
3,921,862	+		Pf1N1B4_3514	0.67	+0.1
3,921,863	-		Pf1N1B4_3514	0.67	+1.1
3,921,953	+		Pf1N1B4_3514	0.72	+2.4
3,921,954	-		Pf1N1B4_3514	0.72	-0.4
3,921,954	-		Pf1N1B4_3514	0.72	+0.7
3,921,954	-		Pf1N1B4_3514	0.72	+1.9
3,922,057	+		Pf1N1B4_3514	0.77	+0.9
3,922,057	+		Pf1N1B4_3514	0.77	+0.9
3,922,057	+		Pf1N1B4_3514	0.77	+0.9
3,922,057	+		Pf1N1B4_3514	0.77	+1.4
3,922,057	+		Pf1N1B4_3514	0.77	+0.6
3,922,058	-		Pf1N1B4_3514	0.77	+1.8
3,922,058	-		Pf1N1B4_3514	0.77	+0.8
3,922,058	-		Pf1N1B4_3514	0.77	+0.9
3,922,198	+		Pf1N1B4_3514	0.84	+0.6
3,922,198	+		Pf1N1B4_3514	0.84	+0.8
3,922,198	+		Pf1N1B4_3514	0.84	+1.5
3,922,198	+		Pf1N1B4_3514	0.84	-0.6
3,922,198	+		Pf1N1B4_3514	0.84	+0.7
3,922,198	+		Pf1N1B4_3514	0.84	+1.1
3,922,198	+		Pf1N1B4_3514	0.84	+2.2
3,922,198	+		Pf1N1B4_3514	0.84	+0.9
3,922,198	+		Pf1N1B4_3514	0.84	+2.5
3,922,199	-		Pf1N1B4_3514	0.84	+1.1
3,922,199	-		Pf1N1B4_3514	0.84	+1.3
3,922,199	-		Pf1N1B4_3514	0.84	+1.7
3,922,199	-		Pf1N1B4_3514	0.84	+2.3
3,922,199	-		Pf1N1B4_3514	0.84	+0.5
3,922,227	+		Pf1N1B4_3514	0.86	+1.5
3,922,227	+				+4.4
3,922,227	+		Pf1N1B4_3514	0.86	+1.9
3,922,228	-		Pf1N1B4_3514	0.86	+0.6
3,922,242	+		Pf1N1B4_3514	0.87	+1.2
3,922,242	+		Pf1N1B4_3514	0.87	+1.0
3,922,243	-		Pf1N1B4_3514	0.87	+0.9
3,922,397	+				+1.8
3,922,398	-				+1.7
3,922,463	+				+0.6
3,922,552	+				-0.2
3,922,583	+				-0.9
3,922,583	+				+0.8
3,922,584	-		Pf1N1B4_3515	0.10	-1.0
3,922,584	-		Pf1N1B4_3515	0.10	-1.7
3,922,683	+		Pf1N1B4_3515	0.21	+0.4
3,922,683	+		Pf1N1B4_3515	0.21	-0.2
3,922,683	+		Pf1N1B4_3515	0.21	+0.9
3,922,683	+		Pf1N1B4_3515	0.21	+2.2
3,922,683	+		Pf1N1B4_3515	0.21	-0.6
3,922,684	-		Pf1N1B4_3515	0.21	-0.7
3,922,684	-		Pf1N1B4_3515	0.21	-0.1
3,922,684	-		Pf1N1B4_3515	0.21	+0.0
3,922,687	+		Pf1N1B4_3515	0.21	+0.3
3,922,752	+		Pf1N1B4_3515	0.28	+1.7
3,922,752	+		Pf1N1B4_3515	0.28	+0.9
3,922,752	+		Pf1N1B4_3515	0.28	+0.4
3,922,752	+		Pf1N1B4_3515	0.28	+0.7
3,922,752	+		Pf1N1B4_3515	0.28	+1.5
3,922,791	+		Pf1N1B4_3515	0.32	+0.5
3,922,792	-		Pf1N1B4_3515	0.32	+0.3
3,923,165	+		Pf1N1B4_3515	0.72	+0.8
3,923,425	+				-1.1
3,923,425	+				+0.4
3,923,425	+				+1.4
3,923,425	+				+1.0
3,923,425	+				+0.1
3,923,425	+				+0.4
3,923,425	+				+1.6
3,923,425	+				+0.9
3,923,426	-				-0.8
3,923,426	-				+1.2
3,923,426	-				-0.5
3,923,426	-				-0.6
3,923,449	+				-0.4
3,923,449	+				+0.1
3,923,449	+				+0.4
3,923,449	+				+2.1
3,923,450	-				+0.6
3,923,470	+				-1.6
3,923,470	+				+1.4
3,923,470	+				-0.1
3,923,470	+				+0.2
3,923,470	+				+0.5
3,923,471	-				+0.4
3,923,620	+				+0.3
3,923,620	+				+1.8
3,923,620	+				+1.8
3,923,620	+				-0.0
3,923,620	+				+0.6
3,923,621	-				+0.6
3,923,621	-				+0.0
3,923,623	+				-0.4
3,923,623	+				+0.7
3,923,623	+				+1.1
3,923,623	+				-0.4
3,923,624	-				-0.4
3,923,661	+		Pf1N1B4_3516	0.11	+0.2
3,923,734	+		Pf1N1B4_3516	0.15	+0.6
3,923,734	+		Pf1N1B4_3516	0.15	+1.1
3,923,734	+		Pf1N1B4_3516	0.15	+0.3
3,923,734	+		Pf1N1B4_3516	0.15	+0.5
3,923,734	+		Pf1N1B4_3516	0.15	+1.5
3,923,734	+		Pf1N1B4_3516	0.15	+1.6
3,923,734	+		Pf1N1B4_3516	0.15	-0.1
3,923,734	+		Pf1N1B4_3516	0.15	-0.5
3,923,735	-		Pf1N1B4_3516	0.15	+0.5
3,923,740	+		Pf1N1B4_3516	0.15	-0.4
3,923,740	+		Pf1N1B4_3516	0.15	+0.5
3,923,740	+		Pf1N1B4_3516	0.15	+0.8
3,923,740	+		Pf1N1B4_3516	0.15	+0.4
3,923,740	+		Pf1N1B4_3516	0.15	-0.1
3,923,740	+		Pf1N1B4_3516	0.15	-0.0
3,923,740	+		Pf1N1B4_3516	0.15	-0.3
3,923,740	+				+1.6
3,923,740	+		Pf1N1B4_3516	0.15	+0.5
3,923,740	+		Pf1N1B4_3516	0.15	-0.2
3,923,740	+		Pf1N1B4_3516	0.15	+0.4
3,923,740	+		Pf1N1B4_3516	0.15	+0.4
3,923,740	+		Pf1N1B4_3516	0.15	+0.9
3,923,740	+		Pf1N1B4_3516	0.15	-0.8
3,923,741	-		Pf1N1B4_3516	0.15	+0.9
3,923,741	-		Pf1N1B4_3516	0.15	-1.2
3,923,741	-		Pf1N1B4_3516	0.15	-0.0
3,923,833	+		Pf1N1B4_3516	0.19	+0.5
3,923,833	+		Pf1N1B4_3516	0.19	+0.7
3,923,833	+		Pf1N1B4_3516	0.19	+1.8
3,923,833	+		Pf1N1B4_3516	0.19	+1.3
3,923,834	-		Pf1N1B4_3516	0.19	-0.4
3,923,834	-		Pf1N1B4_3516	0.19	-0.7
3,923,881	+		Pf1N1B4_3516	0.22	+1.2
3,923,932	+		Pf1N1B4_3516	0.24	+0.8
3,923,932	+		Pf1N1B4_3516	0.24	+0.5
3,923,998	+		Pf1N1B4_3516	0.27	+2.2
3,923,998	+		Pf1N1B4_3516	0.27	-1.3
3,924,049	+		Pf1N1B4_3516	0.29	+0.8
3,924,103	+		Pf1N1B4_3516	0.32	+0.6
3,924,104	-		Pf1N1B4_3516	0.32	+0.4
3,924,139	+		Pf1N1B4_3516	0.34	+0.6
3,924,139	+		Pf1N1B4_3516	0.34	-0.4
3,924,193	+		Pf1N1B4_3516	0.36	+0.0
3,924,193	+		Pf1N1B4_3516	0.36	+0.9
3,924,193	+		Pf1N1B4_3516	0.36	+1.9
3,924,193	+		Pf1N1B4_3516	0.36	+0.8
3,924,194	-		Pf1N1B4_3516	0.36	+0.1
3,924,194	-				+1.8
3,924,289	+		Pf1N1B4_3516	0.41	-0.1
3,924,289	+		Pf1N1B4_3516	0.41	+1.3
3,924,289	+		Pf1N1B4_3516	0.41	+0.7
3,924,289	+		Pf1N1B4_3516	0.41	+1.0
3,924,289	+		Pf1N1B4_3516	0.41	-0.3
3,924,290	-		Pf1N1B4_3516	0.41	+1.6
3,924,290	-		Pf1N1B4_3516	0.41	-1.9
3,924,290	-		Pf1N1B4_3516	0.41	-0.1
3,924,290	-		Pf1N1B4_3516	0.41	+0.7
3,924,319	+		Pf1N1B4_3516	0.42	+0.1
3,924,319	+		Pf1N1B4_3516	0.42	+0.5
3,924,385	+		Pf1N1B4_3516	0.45	-0.1