Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3123

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1
3,507,624	+		Pf1N1B4_3119	0.79	+0.0
3,507,624	+		Pf1N1B4_3119	0.79	-0.7
3,507,625	-				+1.6
3,507,824	+		Pf1N1B4_3120	0.73	-0.0
3,507,824	+		Pf1N1B4_3120	0.73	-1.4
3,507,824	+		Pf1N1B4_3120	0.73	-0.6
3,507,825	-				+0.4
3,507,913	+		Pf1N1B4_3121	0.15	-1.1
3,507,914	-		Pf1N1B4_3121	0.15	+1.2
3,507,914	-		Pf1N1B4_3121	0.15	-0.8
3,507,914	-		Pf1N1B4_3121	0.15	-0.8
3,507,948	+		Pf1N1B4_3121	0.21	-1.2
3,507,949	-		Pf1N1B4_3121	0.21	+0.6
3,507,949	-		Pf1N1B4_3121	0.21	-1.4
3,507,949	-		Pf1N1B4_3121	0.21	+1.6
3,507,949	-		Pf1N1B4_3121	0.21	-0.0
3,507,949	-		Pf1N1B4_3121	0.21	-0.6
3,508,100	-		Pf1N1B4_3121	0.47	-0.7
3,508,100	-		Pf1N1B4_3121	0.47	+0.7
3,508,137	+		Pf1N1B4_3121	0.53	+0.8
3,508,152	+		Pf1N1B4_3121	0.56	-1.6
3,508,153	-		Pf1N1B4_3121	0.56	-0.2
3,508,399	+				+0.3
3,508,399	+				-0.0
3,508,587	-				-0.5
3,508,639	+				-1.2
3,508,639	+				-0.1
3,508,639	+				-1.2
3,508,640	-				-0.4
3,508,640	-				+0.1
3,508,813	+		Pf1N1B4_3123	0.15	+0.4
3,508,813	+		Pf1N1B4_3123	0.15	+0.2
3,508,813	+				+0.3
3,508,813	+		Pf1N1B4_3123	0.15	+1.0
3,508,813	+		Pf1N1B4_3123	0.15	-2.1
3,508,813	+		Pf1N1B4_3123	0.15	+0.5
3,508,814	-		Pf1N1B4_3123	0.15	-0.3
3,508,814	-		Pf1N1B4_3123	0.15	-1.0
3,508,945	+		Pf1N1B4_3123	0.24	-1.5
3,508,945	+				+0.2
3,508,945	+		Pf1N1B4_3123	0.24	-0.2
3,509,374	+		Pf1N1B4_3123	0.53	+1.2
3,509,374	+		Pf1N1B4_3123	0.53	+0.2
3,509,374	+		Pf1N1B4_3123	0.53	+1.8
3,509,633	-		Pf1N1B4_3123	0.70	-1.1
3,509,633	-		Pf1N1B4_3123	0.70	-0.4
3,509,650	+		Pf1N1B4_3123	0.71	-0.0
3,509,650	+		Pf1N1B4_3123	0.71	-1.0
3,509,651	-		Pf1N1B4_3123	0.71	+1.0
3,509,651	-		Pf1N1B4_3123	0.71	+0.1
3,509,653	+		Pf1N1B4_3123	0.71	-0.0
3,509,653	+		Pf1N1B4_3123	0.71	+0.6
3,509,666	-		Pf1N1B4_3123	0.72	+0.2
3,509,666	-		Pf1N1B4_3123	0.72	-1.1
3,509,695	+		Pf1N1B4_3123	0.74	+0.6
3,509,695	+		Pf1N1B4_3123	0.74	-0.2
3,509,695	+		Pf1N1B4_3123	0.74	+1.6
3,509,696	-		Pf1N1B4_3123	0.74	-0.5
3,509,696	-		Pf1N1B4_3123	0.74	+0.5
3,509,731	+		Pf1N1B4_3123	0.76	+0.2
3,509,732	-		Pf1N1B4_3123	0.76	-2.3
3,509,732	-		Pf1N1B4_3123	0.76	+1.2
3,509,799	+		Pf1N1B4_3123	0.81	+0.2
3,509,803	+		Pf1N1B4_3123	0.81	+1.0
3,509,803	+		Pf1N1B4_3123	0.81	-2.2
3,509,803	+		Pf1N1B4_3123	0.81	-0.2
3,509,804	-		Pf1N1B4_3123	0.81	+0.5
3,509,804	-		Pf1N1B4_3123	0.81	-2.6
3,510,016	+				+0.6
3,510,016	+				-1.6
3,510,016	+				-1.2
3,510,017	-				-0.3
3,510,017	-				+0.1
3,510,017	-				-0.6
3,510,017	-				-1.0
3,510,017	-				-1.2
3,510,067	+				+0.6
3,510,067	+				-1.3
3,510,067	+				+0.6
3,510,067	+				-0.3
3,510,068	-				-0.2
3,510,132	+				+1.0
3,510,132	+				-0.0
3,510,133	-				+0.4
3,510,133	-				-0.4
3,510,179	+				-0.2
3,510,179	+				-0.1
3,510,179	+				-0.8
3,510,180	-				-0.5
3,510,209	-		Pf1N1B4_3124	0.16	+0.1
3,510,272	+		Pf1N1B4_3124	0.34	+3.6
3,510,272	+		Pf1N1B4_3124	0.34	+0.7
3,510,272	+		Pf1N1B4_3124	0.34	+0.4
3,510,273	-		Pf1N1B4_3124	0.35	-2.3
3,510,273	-		Pf1N1B4_3124	0.35	+1.7
3,510,273	-		Pf1N1B4_3124	0.35	+0.4
3,510,273	-		Pf1N1B4_3124	0.35	-0.5
3,510,273	-		Pf1N1B4_3124	0.35	+0.6
3,510,273	-		Pf1N1B4_3124	0.35	+0.8
3,510,273	-		Pf1N1B4_3124	0.35	+0.7
3,510,398	+		Pf1N1B4_3124	0.71	-1.2
3,510,416	+		Pf1N1B4_3124	0.76	-1.1
3,510,611	-		Pf1N1B4_3125	0.39	-0.2
3,510,664	+		Pf1N1B4_3125	0.57	+0.6
3,510,664	+		Pf1N1B4_3125	0.57	+0.3
3,510,664	+		Pf1N1B4_3125	0.57	-0.0
3,510,664	+		Pf1N1B4_3125	0.57	-0.8
3,510,664	+		Pf1N1B4_3125	0.57	-1.0
3,510,664	+		Pf1N1B4_3125	0.57	-1.4
3,510,665	-		Pf1N1B4_3125	0.57	+2.0
3,510,665	-		Pf1N1B4_3125	0.57	+0.8
3,510,665	-		Pf1N1B4_3125	0.57	-0.3
3,510,805	-				+1.6
3,510,805	-				+1.9
3,510,805	-				-0.8
3,511,063	+				+0.2