Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2842

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1
3,185,496	+		Pf1N1B4_2841	0.18	-0.0
3,185,496	+		Pf1N1B4_2841	0.18	-0.3
3,185,496	+				+0.2
3,185,496	+		Pf1N1B4_2841	0.18	+0.8
3,185,497	-		Pf1N1B4_2841	0.19	-1.4
3,185,497	-		Pf1N1B4_2841	0.19	-0.1
3,185,497	-		Pf1N1B4_2841	0.19	-0.6
3,185,497	-		Pf1N1B4_2841	0.19	+0.6
3,185,497	-		Pf1N1B4_2841	0.19	+0.2
3,185,497	-		Pf1N1B4_2841	0.19	+0.6
3,185,498	+		Pf1N1B4_2841	0.19	-0.0
3,185,498	+		Pf1N1B4_2841	0.19	-0.0
3,185,553	+		Pf1N1B4_2841	0.23	+0.9
3,185,553	+		Pf1N1B4_2841	0.23	+0.1
3,185,559	+		Pf1N1B4_2841	0.24	-1.4
3,185,559	+		Pf1N1B4_2841	0.24	-2.4
3,185,559	+		Pf1N1B4_2841	0.24	-0.9
3,185,559	+				+2.2
3,185,562	+		Pf1N1B4_2841	0.24	-0.4
3,185,562	+		Pf1N1B4_2841	0.24	-0.3
3,185,563	-		Pf1N1B4_2841	0.24	-0.8
3,185,686	+		Pf1N1B4_2841	0.34	-1.4
3,185,686	+		Pf1N1B4_2841	0.34	+0.4
3,185,687	-		Pf1N1B4_2841	0.34	-1.7
3,185,687	-				+2.2
3,185,687	-		Pf1N1B4_2841	0.34	+0.3
3,185,971	+		Pf1N1B4_2841	0.57	+0.1
3,185,971	+		Pf1N1B4_2841	0.57	-1.4
3,185,972	-		Pf1N1B4_2841	0.58	+0.6
3,186,022	+		Pf1N1B4_2841	0.62	+1.0
3,186,022	+		Pf1N1B4_2841	0.62	-0.2
3,186,022	+		Pf1N1B4_2841	0.62	-0.5
3,186,022	+		Pf1N1B4_2841	0.62	+0.6
3,186,023	-		Pf1N1B4_2841	0.62	-1.5
3,186,023	-		Pf1N1B4_2841	0.62	+0.3
3,186,023	-		Pf1N1B4_2841	0.62	+1.3
3,186,023	-		Pf1N1B4_2841	0.62	+0.7
3,186,023	-		Pf1N1B4_2841	0.62	+0.4
3,186,091	+		Pf1N1B4_2841	0.67	-0.4
3,186,091	+		Pf1N1B4_2841	0.67	+0.8
3,186,091	+		Pf1N1B4_2841	0.67	-1.0
3,186,091	+				-0.7
3,186,091	+		Pf1N1B4_2841	0.67	+1.3
3,186,106	+		Pf1N1B4_2841	0.69	-0.8
3,186,106	+		Pf1N1B4_2841	0.69	-1.4
3,186,107	-		Pf1N1B4_2841	0.69	+0.6
3,186,107	-		Pf1N1B4_2841	0.69	-1.2
3,186,166	-		Pf1N1B4_2841	0.73	+0.6
3,186,240	+		Pf1N1B4_2841	0.80	-1.6
3,186,324	-		Pf1N1B4_2841	0.86	+1.0
3,186,372	+				-0.5
3,186,457	+				-0.2
3,186,457	+				+0.1
3,186,457	+				-0.7
3,186,457	+				-0.0
3,186,458	-				-0.4
3,186,458	-				-1.0
3,186,458	-				+1.2
3,186,458	-				+0.4
3,186,458	-				-1.9
3,186,458	-				+2.3
3,186,459	+				-0.6
3,186,459	+				-0.0
3,186,459	+				-0.7
3,186,459	+				+1.0
3,186,459	+				+0.9
3,186,459	+				+1.0
3,186,459	+				+0.1
3,186,459	+				-0.7
3,186,459	+				+0.1
3,186,459	+				+0.4
3,186,460	-				+1.2
3,186,460	-				-0.3
3,186,460	-				+2.5
3,186,460	-				+0.3
3,186,460	-				+0.3
3,186,460	-				-0.2
3,186,460	-				-0.9
3,186,562	+				-1.0
3,186,660	-				+1.6
3,186,669	+		Pf1N1B4_2842	0.10	-1.0
3,186,669	+		Pf1N1B4_2842	0.10	-0.7
3,186,669	+		Pf1N1B4_2842	0.10	+0.4
3,186,669	+		Pf1N1B4_2842	0.10	+0.2
3,186,669	+		Pf1N1B4_2842	0.10	+1.1
3,186,670	-		Pf1N1B4_2842	0.11	-1.7
3,186,670	-		Pf1N1B4_2842	0.11	+1.2
3,186,670	-		Pf1N1B4_2842	0.11	+0.7
3,186,690	+		Pf1N1B4_2842	0.12	-1.7
3,186,690	+		Pf1N1B4_2842	0.12	+0.6
3,186,690	+		Pf1N1B4_2842	0.12	-0.0
3,186,726	+		Pf1N1B4_2842	0.14	+0.3
3,186,726	+		Pf1N1B4_2842	0.14	-2.2
3,186,726	+		Pf1N1B4_2842	0.14	+0.4
3,186,726	+		Pf1N1B4_2842	0.14	-1.0
3,186,726	+		Pf1N1B4_2842	0.14	-0.0
3,186,726	+		Pf1N1B4_2842	0.14	-0.0
3,186,726	+		Pf1N1B4_2842	0.14	+0.6
3,186,726	+		Pf1N1B4_2842	0.14	+0.6
3,186,726	+		Pf1N1B4_2842	0.14	-1.2
3,186,727	-		Pf1N1B4_2842	0.14	-0.0
3,186,727	-				+2.2
3,186,727	-		Pf1N1B4_2842	0.14	-1.0
3,186,727	-		Pf1N1B4_2842	0.14	-1.6
3,186,727	-		Pf1N1B4_2842	0.14	-0.7
3,186,727	-		Pf1N1B4_2842	0.14	-1.9
3,187,144	+		Pf1N1B4_2842	0.38	-0.3
3,187,144	+		Pf1N1B4_2842	0.38	-0.4
3,187,144	+		Pf1N1B4_2842	0.38	-2.1
3,187,144	+		Pf1N1B4_2842	0.38	-0.7
3,187,145	-		Pf1N1B4_2842	0.38	-0.5
3,187,182	+		Pf1N1B4_2842	0.41	-1.9
3,187,183	-				+0.6
3,187,183	-				+0.6
3,187,183	-		Pf1N1B4_2842	0.41	-0.7
3,187,183	-		Pf1N1B4_2842	0.41	-1.3
3,187,260	+		Pf1N1B4_2842	0.45	+0.6
3,187,260	+		Pf1N1B4_2842	0.45	-0.2
3,187,260	+		Pf1N1B4_2842	0.45	+1.4
3,187,260	+		Pf1N1B4_2842	0.45	-0.5
3,187,260	+		Pf1N1B4_2842	0.45	+0.6
3,187,260	+				-0.4
3,187,260	+		Pf1N1B4_2842	0.45	-1.4
3,187,260	+		Pf1N1B4_2842	0.45	+1.6
3,187,260	+		Pf1N1B4_2842	0.45	+0.7
3,187,261	-		Pf1N1B4_2842	0.45	-2.2
3,187,261	-		Pf1N1B4_2842	0.45	-1.3
3,187,261	-		Pf1N1B4_2842	0.45	+0.2
3,187,261	-		Pf1N1B4_2842	0.45	-0.3
3,187,261	-		Pf1N1B4_2842	0.45	-0.1
3,187,261	-		Pf1N1B4_2842	0.45	-0.5
3,187,261	-		Pf1N1B4_2842	0.45	-0.9
3,187,261	-		Pf1N1B4_2842	0.45	-1.7
3,187,261	-		Pf1N1B4_2842	0.45	-2.4
3,187,261	-		Pf1N1B4_2842	0.45	+0.8
3,187,261	-		Pf1N1B4_2842	0.45	-0.6
3,187,334	+		Pf1N1B4_2842	0.50	-1.7
3,187,334	+		Pf1N1B4_2842	0.50	-0.9
3,187,334	+		Pf1N1B4_2842	0.50	+0.2
3,187,334	+				+0.6
3,187,334	+		Pf1N1B4_2842	0.50	-0.9
3,187,337	+		Pf1N1B4_2842	0.50	+0.8
3,187,338	-		Pf1N1B4_2842	0.50	-1.7
3,187,569	+		Pf1N1B4_2842	0.63	+0.3
3,187,897	+		Pf1N1B4_2842	0.83	+0.0
3,187,898	-				-0.7
3,188,070	+				+1.2
3,188,071	-				-1.0
3,188,222	+				+1.6
3,188,222	+				-0.8
3,188,222	+				-0.3
3,188,222	+				-1.0
3,188,222	+				-1.9
3,188,222	+				-0.4
3,188,222	+				-1.0
3,188,222	+				-1.0
3,188,222	+				+1.1
3,188,222	+				+1.6
3,188,222	+				-1.4
3,188,222	+				-1.4
3,188,222	+				-1.6
3,188,223	-				+0.6
3,188,223	-				-0.3
3,188,223	-				-0.3
3,188,223	-				+0.4
3,188,223	-				-0.3
3,188,223	-				-1.2
3,188,223	-				+1.1
3,188,223	-				+0.5
3,188,224	+				-0.2
3,188,224	+				-2.0
3,188,224	+				-1.3
3,188,224	+				+1.0
3,188,225	-				-0.2
3,188,225	-				-1.2
3,188,229	+				-0.3
3,188,230	-				+0.9
3,188,230	-				-0.3
3,188,282	+				-2.9
3,188,282	+				-0.4
3,188,282	+				+0.6
3,188,283	-				-0.6
3,188,301	-				-0.2
3,188,301	-				-0.7
3,188,438	+				-0.0
3,188,439	-				-1.1
3,188,533	+		Pf1N1B4_2843	0.27	+0.2
3,188,585	+		Pf1N1B4_2843	0.39	-1.2
3,188,585	+		Pf1N1B4_2843	0.39	-0.2
3,188,597	+		Pf1N1B4_2843	0.42	-0.6
3,188,597	+		Pf1N1B4_2843	0.42	-0.0
3,188,597	+		Pf1N1B4_2843	0.42	-1.9
3,188,597	+		Pf1N1B4_2843	0.42	-0.4
3,188,597	+		Pf1N1B4_2843	0.42	-0.3
3,188,598	-		Pf1N1B4_2843	0.43	+1.6
3,188,600	+		Pf1N1B4_2843	0.43	-0.8
3,188,600	+		Pf1N1B4_2843	0.43	-0.0
3,188,600	+		Pf1N1B4_2843	0.43	-0.3
3,188,642	+		Pf1N1B4_2843	0.53	-2.1
3,188,642	+		Pf1N1B4_2843	0.53	-0.7
3,188,642	+		Pf1N1B4_2843	0.53	-1.1
3,188,642	+		Pf1N1B4_2843	0.53	-1.9
3,188,643	-		Pf1N1B4_2843	0.53	-1.4
3,188,654	+		Pf1N1B4_2843	0.56	+0.8
3,188,654	+		Pf1N1B4_2843	0.56	-2.6
3,188,654	+		Pf1N1B4_2843	0.56	-1.1
3,188,655	-		Pf1N1B4_2843	0.56	-1.9
3,188,655	-		Pf1N1B4_2843	0.56	+0.4
3,188,687	+		Pf1N1B4_2843	0.64	+0.6
3,188,726	-		Pf1N1B4_2843	0.73	-0.6
3,188,799	+				-0.0
3,188,799	+				+1.0
3,188,799	+				+0.3
3,188,799	+				-1.6
3,188,799	+				+0.9
3,188,799	+				-1.5
3,188,799	+				-0.7
3,188,800	-				+1.0
3,188,800	-				-1.0
3,188,800	-				+0.6
3,188,807	+				-0.6
3,188,808	-				-0.2
3,188,834	+				+0.8
3,188,834	+				-0.3
3,188,983	-				-0.0
3,189,142	+				-0.4
3,189,143	-				-1.2
3,189,143	-				-0.5
3,189,151	+				-0.6
3,189,151	+				+2.3
3,189,152	-				+0.2
3,189,157	+				-0.0
3,189,158	-				+0.3