Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1374

Experiment: Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1
1,571,307	+				+0.6
1,571,307	+				+0.1
1,571,308	-				+1.1
1,571,308	-				-0.4
1,571,328	+				+0.8
1,571,338	+				-2.0
1,571,339	-				-1.6
1,571,352	+				-1.1
1,571,352	+				+0.8
1,571,353	-				-1.0
1,571,494	+		Pf1N1B4_1373	0.20	+0.2
1,571,494	+		Pf1N1B4_1373	0.20	+0.2
1,571,494	+		Pf1N1B4_1373	0.20	+0.3
1,571,494	+		Pf1N1B4_1373	0.20	-0.0
1,571,494	+		Pf1N1B4_1373	0.20	-0.1
1,571,495	-		Pf1N1B4_1373	0.21	-0.0
1,571,495	-		Pf1N1B4_1373	0.21	-1.4
1,571,495	-		Pf1N1B4_1373	0.21	-0.7
1,571,495	-		Pf1N1B4_1373	0.21	-0.8
1,571,495	-		Pf1N1B4_1373	0.21	-0.4
1,571,495	-		Pf1N1B4_1373	0.21	-2.2
1,571,495	-		Pf1N1B4_1373	0.21	-0.8
1,571,495	-		Pf1N1B4_1373	0.21	-1.0
1,571,731	+		Pf1N1B4_1373	0.59	-1.3
1,571,731	+		Pf1N1B4_1373	0.59	+0.3
1,571,731	+		Pf1N1B4_1373	0.59	-1.2
1,571,731	+		Pf1N1B4_1373	0.59	+0.8
1,571,731	+		Pf1N1B4_1373	0.59	-0.9
1,571,731	+		Pf1N1B4_1373	0.59	-0.8
1,571,732	-		Pf1N1B4_1373	0.59	+0.3
1,571,732	-		Pf1N1B4_1373	0.59	-1.8
1,571,732	-		Pf1N1B4_1373	0.59	-0.9
1,571,732	-		Pf1N1B4_1373	0.59	-0.8
1,571,837	+		Pf1N1B4_1373	0.76	-2.1
1,571,850	-		Pf1N1B4_1373	0.78	-1.6
1,571,990	+				+0.1
1,571,990	+				+0.4
1,571,990	+				-0.2
1,571,990	+				+0.1
1,571,991	-				-0.1
1,571,991	-				-0.2
1,571,991	-				-0.7
1,571,991	-				+0.2
1,571,991	-				-1.0
1,571,991	-				-0.2
1,571,991	-				-0.8
1,571,991	-				-0.8
1,572,007	-				-1.1
1,572,007	-				-0.5
1,572,226	+		Pf1N1B4_1374	0.38	-0.8
1,572,227	-		Pf1N1B4_1374	0.38	-0.0
1,572,437	+		Pf1N1B4_1374	0.74	+1.6
1,572,437	+		Pf1N1B4_1374	0.74	-1.4
1,572,437	+		Pf1N1B4_1374	0.74	-1.5
1,572,437	+		Pf1N1B4_1374	0.74	-1.2
1,572,635	+				+0.2
1,572,635	+				+1.3
1,572,743	+				-0.0
1,572,992	+		Pf1N1B4_1375	0.18	-0.6
1,572,992	+		Pf1N1B4_1375	0.18	+0.8
1,572,992	+		Pf1N1B4_1375	0.18	-1.5
1,572,992	+		Pf1N1B4_1375	0.18	+0.2
1,572,992	+		Pf1N1B4_1375	0.18	-0.7
1,572,993	-		Pf1N1B4_1375	0.18	-1.6
1,572,993	-		Pf1N1B4_1375	0.18	+1.0
1,573,103	+		Pf1N1B4_1375	0.28	-0.5
1,573,103	+		Pf1N1B4_1375	0.28	-1.2
1,573,104	-		Pf1N1B4_1375	0.28	-0.6
1,573,151	+		Pf1N1B4_1375	0.32	-0.6
1,573,151	+		Pf1N1B4_1375	0.32	-1.0
1,573,152	-		Pf1N1B4_1375	0.33	-0.2
1,573,280	+		Pf1N1B4_1375	0.44	-0.5
1,573,280	+		Pf1N1B4_1375	0.44	-0.3
1,573,280	+		Pf1N1B4_1375	0.44	-0.2
1,573,280	+		Pf1N1B4_1375	0.44	-1.2
1,573,281	-		Pf1N1B4_1375	0.44	-0.0
1,573,281	-		Pf1N1B4_1375	0.44	-1.4
1,573,281	-		Pf1N1B4_1375	0.44	-2.0
1,573,281	-		Pf1N1B4_1375	0.44	-0.0
1,573,392	+		Pf1N1B4_1375	0.54	-0.0
1,573,392	+		Pf1N1B4_1375	0.54	-0.2
1,573,392	+		Pf1N1B4_1375	0.54	-2.7
1,573,392	+		Pf1N1B4_1375	0.54	+0.0
1,573,392	+		Pf1N1B4_1375	0.54	+0.1
1,573,393	-		Pf1N1B4_1375	0.54	+0.4
1,573,393	-		Pf1N1B4_1375	0.54	+1.3
1,573,393	-		Pf1N1B4_1375	0.54	-2.1
1,573,393	-		Pf1N1B4_1375	0.54	-1.7
1,573,393	-		Pf1N1B4_1375	0.54	-1.6
1,573,393	-		Pf1N1B4_1375	0.54	-0.4
1,573,419	+		Pf1N1B4_1375	0.56	-0.0
1,573,420	-		Pf1N1B4_1375	0.56	+0.8
1,573,495	+		Pf1N1B4_1375	0.63	+1.0
1,573,529	+		Pf1N1B4_1375	0.66	+1.0
1,573,529	+		Pf1N1B4_1375	0.66	-1.8
1,573,529	+		Pf1N1B4_1375	0.66	-0.8
1,573,530	-		Pf1N1B4_1375	0.66	-0.3
1,573,530	-		Pf1N1B4_1375	0.66	-0.6
1,573,530	-		Pf1N1B4_1375	0.66	-1.6
1,573,530	-		Pf1N1B4_1375	0.66	-0.1
1,573,530	-		Pf1N1B4_1375	0.66	+3.6