Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004826

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
1,038,114	-		ABIE53_004825	0.63	-0.1
1,038,114	-		ABIE53_004825	0.63	-1.4
1,038,200	+		ABIE53_004825	0.66	+0.6
1,038,200	+		ABIE53_004825	0.66	-0.6
1,038,201	-		ABIE53_004825	0.67	+2.2
1,038,236	+		ABIE53_004825	0.68	+2.2
1,038,245	+		ABIE53_004825	0.69	+0.8
1,038,346	-		ABIE53_004825	0.73	+0.4
1,038,437	+		ABIE53_004825	0.77	-0.5
1,038,437	+		ABIE53_004825	0.77	-0.6
1,038,438	-		ABIE53_004825	0.77	+1.5
1,038,438	-		ABIE53_004825	0.77	-0.8
1,038,438	-		ABIE53_004825	0.77	+0.2
1,038,632	+		ABIE53_004825	0.86	+1.4
1,038,633	-		ABIE53_004825	0.86	-0.3
1,038,687	-		ABIE53_004825	0.89	+0.3
1,038,710	+		ABIE53_004825	0.90	-1.1
1,038,868	+				+1.2
1,038,868	+				-0.8
1,038,868	+				-1.5
1,038,868	+				+1.5
1,038,868	+				-1.6
1,038,868	+				-0.8
1,038,868	+				+0.6
1,038,869	-				-0.6
1,038,869	-				+0.2
1,038,869	-				+2.2
1,038,869	-				-0.1
1,038,869	-				+0.3
1,038,869	-				-0.4
1,039,215	-				-1.2
1,039,349	+		ABIE53_004826	0.12	+0.2
1,039,442	+		ABIE53_004826	0.16	-1.9
1,039,442	+		ABIE53_004826	0.16	-1.1
1,039,442	+		ABIE53_004826	0.16	-3.5
1,039,442	+		ABIE53_004826	0.16	-0.1
1,039,442	+		ABIE53_004826	0.16	-4.4
1,039,607	+		ABIE53_004826	0.23	-1.6
1,039,608	-		ABIE53_004826	0.23	-0.8
1,039,638	+		ABIE53_004826	0.25	+0.6
1,039,638	+		ABIE53_004826	0.25	-2.4
1,039,638	+		ABIE53_004826	0.25	-0.1
1,039,638	+		ABIE53_004826	0.25	-0.4
1,039,638	+		ABIE53_004826	0.25	-3.4
1,039,638	+		ABIE53_004826	0.25	+0.6
1,039,639	-		ABIE53_004826	0.25	-1.7
1,039,639	-		ABIE53_004826	0.25	+1.2
1,039,639	-		ABIE53_004826	0.25	-2.1
1,039,721	+		ABIE53_004826	0.29	-2.7
1,039,727	+		ABIE53_004826	0.29	-2.6
1,039,727	+		ABIE53_004826	0.29	+0.9
1,039,727	+		ABIE53_004826	0.29	+0.2
1,039,727	+		ABIE53_004826	0.29	-3.9
1,039,728	-		ABIE53_004826	0.29	-1.2
1,039,728	-		ABIE53_004826	0.29	-2.8
1,039,728	-		ABIE53_004826	0.29	-0.6
1,039,728	-		ABIE53_004826	0.29	-1.0
1,039,728	-		ABIE53_004826	0.29	+0.2
1,039,728	-		ABIE53_004826	0.29	-1.1
1,039,760	+		ABIE53_004826	0.30	-1.3
1,039,761	-		ABIE53_004826	0.30	-0.7
1,039,761	-		ABIE53_004826	0.30	-1.6
1,039,761	-		ABIE53_004826	0.30	-1.6
1,039,761	-		ABIE53_004826	0.30	+0.2
1,039,770	-		ABIE53_004826	0.31	+0.2
1,039,790	+		ABIE53_004826	0.32	-0.4
1,039,790	+		ABIE53_004826	0.32	-1.1
1,039,790	+		ABIE53_004826	0.32	-1.1
1,039,790	+		ABIE53_004826	0.32	-2.4
1,039,790	+		ABIE53_004826	0.32	-0.4
1,039,790	+		ABIE53_004826	0.32	-4.0
1,039,790	+		ABIE53_004826	0.32	+1.2
1,039,791	-		ABIE53_004826	0.32	-2.0
1,039,791	-		ABIE53_004826	0.32	-0.6
1,039,791	-		ABIE53_004826	0.32	-0.4
1,039,791	-		ABIE53_004826	0.32	-2.8
1,039,791	-		ABIE53_004826	0.32	+0.2
1,039,791	-		ABIE53_004826	0.32	+1.6
1,039,928	+		ABIE53_004826	0.38	-1.6
1,039,928	+		ABIE53_004826	0.38	-2.9
1,039,928	+		ABIE53_004826	0.38	-0.1
1,039,928	+		ABIE53_004826	0.38	-2.1
1,039,928	+		ABIE53_004826	0.38	-2.3
1,039,929	-		ABIE53_004826	0.38	-0.7
1,039,929	-		ABIE53_004826	0.38	-1.5
1,039,929	-		ABIE53_004826	0.38	-3.3
1,039,929	-		ABIE53_004826	0.38	-0.6
1,039,929	-		ABIE53_004826	0.38	-1.7
1,039,991	+		ABIE53_004826	0.41	-3.0
1,039,991	+		ABIE53_004826	0.41	-0.6
1,039,991	+		ABIE53_004826	0.41	+0.2
1,039,991	+		ABIE53_004826	0.41	-4.5
1,039,991	+		ABIE53_004826	0.41	-1.0
1,039,991	+		ABIE53_004826	0.41	-2.4
1,039,991	+		ABIE53_004826	0.41	-2.6
1,039,992	-		ABIE53_004826	0.41	-1.3
1,039,992	-		ABIE53_004826	0.41	-1.7
1,039,992	-		ABIE53_004826	0.41	-1.5
1,039,992	-		ABIE53_004826	0.41	+1.2
1,039,992	-		ABIE53_004826	0.41	+0.2
1,039,992	-		ABIE53_004826	0.41	-2.5
1,039,992	-		ABIE53_004826	0.41	-1.0
1,040,028	-		ABIE53_004826	0.42	-0.9
1,040,036	+		ABIE53_004826	0.43	+0.6
1,040,037	-		ABIE53_004826	0.43	-2.8
1,040,081	+		ABIE53_004826	0.45	-3.7
1,040,147	+		ABIE53_004826	0.48	+0.6
1,040,147	+		ABIE53_004826	0.48	+0.6
1,040,147	+		ABIE53_004826	0.48	-2.8
1,040,147	+		ABIE53_004826	0.48	-2.5
1,040,147	+		ABIE53_004826	0.48	-0.6
1,040,147	+		ABIE53_004826	0.48	+1.2
1,040,148	-		ABIE53_004826	0.48	-2.1
1,040,148	-		ABIE53_004826	0.48	+1.8
1,040,148	-		ABIE53_004826	0.48	-1.5
1,040,148	-		ABIE53_004826	0.48	-0.4
1,040,148	-		ABIE53_004826	0.48	-2.3
1,040,148	-		ABIE53_004826	0.48	+0.3
1,040,373	-		ABIE53_004826	0.58	-1.4
1,040,373	-		ABIE53_004826	0.58	-1.7
1,040,447	+		ABIE53_004826	0.61	-1.8
1,040,447	+		ABIE53_004826	0.61	-0.4
1,040,447	+		ABIE53_004826	0.61	-1.5
1,040,447	+		ABIE53_004826	0.61	-1.1
1,040,447	+		ABIE53_004826	0.61	-1.4
1,040,447	+		ABIE53_004826	0.61	+1.2
1,040,448	-		ABIE53_004826	0.61	+0.6
1,040,538	-		ABIE53_004826	0.65	-1.0
1,040,538	-		ABIE53_004826	0.65	-1.0
1,040,729	+		ABIE53_004826	0.74	+0.2
1,040,729	+		ABIE53_004826	0.74	-3.5
1,040,729	+		ABIE53_004826	0.74	+0.6
1,040,730	-		ABIE53_004826	0.74	-1.9
1,040,730	-		ABIE53_004826	0.74	-0.1
1,040,730	-		ABIE53_004826	0.74	-0.4
1,040,730	-		ABIE53_004826	0.74	-1.0
1,040,730	-		ABIE53_004826	0.74	-0.8
1,040,730	-		ABIE53_004826	0.74	-0.7
1,040,730	-		ABIE53_004826	0.74	+1.2
1,040,736	-		ABIE53_004826	0.74	-2.0
1,040,736	-		ABIE53_004826	0.74	-0.8
1,040,736	-		ABIE53_004826	0.74	+0.6
1,040,997	-		ABIE53_004826	0.86	-1.8
1,040,997	-		ABIE53_004826	0.86	-3.6
1,041,002	+		ABIE53_004826	0.86	-3.4
1,041,002	+		ABIE53_004826	0.86	-1.4
1,041,003	-		ABIE53_004826	0.87	-1.6
1,041,003	-		ABIE53_004826	0.87	-1.3
1,041,003	-		ABIE53_004826	0.87	-1.0
1,041,003	-		ABIE53_004826	0.87	-1.8
1,041,006	+		ABIE53_004826	0.87	-1.9
1,041,006	+		ABIE53_004826	0.87	-2.3
1,041,006	+		ABIE53_004826	0.87	-1.5
1,041,006	+		ABIE53_004826	0.87	-0.1
1,041,006	+		ABIE53_004826	0.87	-1.8
1,041,007	-		ABIE53_004826	0.87	-0.6
1,041,007	-		ABIE53_004826	0.87	-2.4
1,041,007	-		ABIE53_004826	0.87	-3.9
1,041,007	-		ABIE53_004826	0.87	+1.4
1,041,453	+				-0.7
1,041,453	+				-1.1
1,041,466	-				+0.5
1,041,559	-				-1.1
1,041,675	+		ABIE53_004827	0.11	+0.2
1,042,128	+		ABIE53_004827	0.24	-1.4
1,042,128	+		ABIE53_004827	0.24	+0.6
1,042,129	-		ABIE53_004827	0.24	+0.6
1,042,224	+		ABIE53_004827	0.27	-0.1
1,042,224	+		ABIE53_004827	0.27	-1.1
1,042,288	+		ABIE53_004827	0.29	-0.8
1,042,288	+		ABIE53_004827	0.29	+0.9
1,042,288	+		ABIE53_004827	0.29	-1.0
1,042,288	+		ABIE53_004827	0.29	-1.9