Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001418

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
1,583,528	+		ABIE53_001417	0.37	-1.5
1,583,529	-		ABIE53_001417	0.37	-1.0
1,583,771	+		ABIE53_001417	0.57	-0.2
1,583,771	+		ABIE53_001417	0.57	-0.1
1,583,771	+		ABIE53_001417	0.57	+1.2
1,583,772	-		ABIE53_001417	0.57	-0.3
1,583,772	-		ABIE53_001417	0.57	+0.2
1,583,824	+		ABIE53_001417	0.61	+2.2
1,583,824	+		ABIE53_001417	0.61	+0.6
1,583,824	+		ABIE53_001417	0.61	-1.8
1,583,824	+		ABIE53_001417	0.61	-0.2
1,583,824	+		ABIE53_001417	0.61	-0.9
1,583,825	-		ABIE53_001417	0.61	-0.6
1,583,825	-		ABIE53_001417	0.61	-1.1
1,583,825	-		ABIE53_001417	0.61	-0.5
1,583,825	-		ABIE53_001417	0.61	-0.0
1,583,825	-		ABIE53_001417	0.61	-0.9
1,583,825	-		ABIE53_001417	0.61	+0.4
1,583,902	-		ABIE53_001417	0.67	-0.7
1,583,975	+		ABIE53_001417	0.73	+0.9
1,583,975	+		ABIE53_001417	0.73	-0.4
1,583,975	+		ABIE53_001417	0.73	+1.4
1,583,975	+		ABIE53_001417	0.73	-1.4
1,583,975	+		ABIE53_001417	0.73	-0.8
1,584,179	+				-0.2
1,584,179	+				-0.1
1,584,369	+				+0.6
1,584,369	+				+2.2
1,584,369	+				-0.1
1,584,370	-				+0.2
1,584,370	-				-0.2
1,584,420	+				+0.1
1,584,421	-				-1.8
1,584,567	+		ABIE53_001418	0.17	+1.2
1,584,567	+		ABIE53_001418	0.17	+0.2
1,584,567	+		ABIE53_001418	0.17	-0.4
1,584,568	-		ABIE53_001418	0.17	-0.9
1,584,568	-		ABIE53_001418	0.17	-0.4
1,584,592	+		ABIE53_001418	0.19	+0.8
1,584,593	+		ABIE53_001418	0.19	+0.9
1,584,593	+		ABIE53_001418	0.19	-0.4
1,584,594	-		ABIE53_001418	0.19	-1.7
1,584,594	-		ABIE53_001418	0.19	+1.0
1,584,594	-		ABIE53_001418	0.19	-1.4
1,584,639	+		ABIE53_001418	0.23	+0.3
1,584,639	+		ABIE53_001418	0.23	-0.6
1,584,639	+		ABIE53_001418	0.23	-2.0
1,584,639	+		ABIE53_001418	0.23	-0.7
1,584,639	+		ABIE53_001418	0.23	+1.6
1,584,639	+		ABIE53_001418	0.23	-2.6
1,584,640	-		ABIE53_001418	0.23	-0.0
1,584,640	-		ABIE53_001418	0.23	+0.6
1,584,640	-		ABIE53_001418	0.23	-1.2
1,584,640	-		ABIE53_001418	0.23	+0.8
1,584,640	-		ABIE53_001418	0.23	+0.6
1,584,640	-		ABIE53_001418	0.23	-1.9
1,584,640	-		ABIE53_001418	0.23	+0.5
1,584,724	-		ABIE53_001418	0.30	-0.2
1,584,741	+		ABIE53_001418	0.32	+0.6
1,584,741	+		ABIE53_001418	0.32	+0.2
1,584,742	-		ABIE53_001418	0.32	-0.0
1,584,744	+		ABIE53_001418	0.32	-0.6
1,585,026	+		ABIE53_001418	0.56	+0.2
1,585,027	-		ABIE53_001418	0.56	-1.7
1,585,027	-		ABIE53_001418	0.56	-1.4
1,585,035	+		ABIE53_001418	0.57	+0.8
1,585,036	-		ABIE53_001418	0.57	+2.2
1,585,111	+		ABIE53_001418	0.63	-2.4
1,585,111	+		ABIE53_001418	0.63	+0.5
1,585,112	-		ABIE53_001418	0.63	+0.6
1,585,112	-		ABIE53_001418	0.63	-0.4
1,585,112	-		ABIE53_001418	0.63	-0.8
1,585,113	+		ABIE53_001418	0.63	+0.6
1,585,113	+		ABIE53_001418	0.63	-1.2
1,585,114	-		ABIE53_001418	0.63	-2.7
1,585,114	-		ABIE53_001418	0.63	-1.8
1,585,114	-		ABIE53_001418	0.63	+0.2
1,585,159	+		ABIE53_001418	0.67	-0.3
1,585,160	-		ABIE53_001418	0.67	-0.9
1,585,160	-		ABIE53_001418	0.67	-0.2
1,585,350	+		ABIE53_001418	0.84	-1.5
1,585,351	-		ABIE53_001418	0.84	+0.4
1,585,383	+		ABIE53_001418	0.86	+0.2
1,585,384	-		ABIE53_001418	0.86	-1.0
1,585,419	+		ABIE53_001418	0.89	+0.0
1,585,420	-		ABIE53_001418	0.89	+0.8
1,585,423	-		ABIE53_001418	0.90	+0.1
1,585,423	-		ABIE53_001418	0.90	-0.9
1,585,482	+				+0.6
1,585,482	+				+0.9
1,585,483	-				-0.7
1,585,483	-				-0.4
1,585,483	-				+0.8
1,585,483	-				-0.2
1,585,483	-				+0.4
1,585,483	-				-1.1
1,585,524	+				+0.2
1,585,525	-				-1.4
1,585,584	-				-1.6
1,585,593	+				-0.4
1,585,593	+				+0.1
1,585,593	+				-0.3
1,585,593	+				-0.2
1,585,594	-				-0.6
1,585,594	-				+2.2
1,585,865	+		ABIE53_001419	0.31	+0.6
1,585,865	+		ABIE53_001419	0.31	-1.8
1,585,916	+		ABIE53_001419	0.37	-0.9
1,585,916	+		ABIE53_001419	0.37	-0.3
1,585,917	-		ABIE53_001419	0.38	+0.4
1,585,917	-		ABIE53_001419	0.38	+0.2
1,585,917	-		ABIE53_001419	0.38	-1.5
1,585,917	-		ABIE53_001419	0.38	-1.9
1,585,917	-		ABIE53_001419	0.38	+1.4
1,585,917	-		ABIE53_001419	0.38	+0.7
1,585,974	+		ABIE53_001419	0.44	-0.1
1,585,974	+		ABIE53_001419	0.44	-0.8
1,585,974	+		ABIE53_001419	0.44	+0.6
1,585,974	+		ABIE53_001419	0.44	-0.6
1,585,975	-		ABIE53_001419	0.44	+0.6
1,585,975	-		ABIE53_001419	0.44	+2.2
1,585,975	-		ABIE53_001419	0.44	-1.1
1,585,975	-		ABIE53_001419	0.44	+0.6
1,585,975	-		ABIE53_001419	0.44	-0.6
1,585,975	-		ABIE53_001419	0.44	-0.2
1,585,975	-		ABIE53_001419	0.44	+0.3
1,585,975	-		ABIE53_001419	0.44	-1.0
1,585,975	-		ABIE53_001419	0.44	+0.6
1,586,024	+		ABIE53_001419	0.50	-0.2
1,586,024	+		ABIE53_001419	0.50	-0.2
1,586,024	+		ABIE53_001419	0.50	-0.3
1,586,024	+		ABIE53_001419	0.50	+0.0
1,586,030	+		ABIE53_001419	0.51	+0.4
1,586,030	+		ABIE53_001419	0.51	-0.7
1,586,030	+		ABIE53_001419	0.51	-0.7
1,586,030	+		ABIE53_001419	0.51	+0.6
1,586,030	+		ABIE53_001419	0.51	-0.9
1,586,030	+		ABIE53_001419	0.51	-1.3
1,586,031	-		ABIE53_001419	0.51	-0.6
1,586,031	-		ABIE53_001419	0.51	-0.0
1,586,031	-		ABIE53_001419	0.51	+2.2
1,586,031	-		ABIE53_001419	0.51	-0.3
1,586,031	-		ABIE53_001419	0.51	+0.1
1,586,031	-		ABIE53_001419	0.51	+0.8
1,586,031	-		ABIE53_001419	0.51	+0.2
1,586,162	+		ABIE53_001419	0.67	-0.6
1,586,162	+		ABIE53_001419	0.67	+0.2
1,586,162	+		ABIE53_001419	0.67	-1.0
1,586,162	+		ABIE53_001419	0.67	-0.4
1,586,162	+		ABIE53_001419	0.67	-0.3
1,586,162	+		ABIE53_001419	0.67	-1.3
1,586,162	+		ABIE53_001419	0.67	-2.3
1,586,163	-		ABIE53_001419	0.67	-0.5
1,586,163	-		ABIE53_001419	0.67	+0.2
1,586,163	-		ABIE53_001419	0.67	-0.4
1,586,163	-		ABIE53_001419	0.67	-0.3
1,586,163	-		ABIE53_001419	0.67	+0.1
1,586,163	-		ABIE53_001419	0.67	-0.5
1,586,163	-		ABIE53_001419	0.67	+0.1
1,586,163	-		ABIE53_001419	0.67	+0.8
1,586,228	+		ABIE53_001419	0.74	+0.2
1,586,229	-		ABIE53_001419	0.75	-1.2
1,586,234	+		ABIE53_001419	0.75	+0.0
1,586,234	+		ABIE53_001419	0.75	+0.1
1,586,234	+		ABIE53_001419	0.75	+0.7
1,586,234	+		ABIE53_001419	0.75	-1.0
1,586,234	+		ABIE53_001419	0.75	-0.2
1,586,235	-		ABIE53_001419	0.75	-1.0
1,586,235	-		ABIE53_001419	0.75	-0.1
1,586,417	+				-0.5
1,586,417	+				+0.2
1,586,418	-				-0.6
1,586,477	+				-1.4
1,586,477	+				+1.2
1,586,477	+				-1.0
1,586,478	-				-1.3
1,586,478	-				-0.9
1,586,478	-				-0.3
1,586,478	-				+0.6
1,586,479	+				-0.6
1,586,479	+				+0.8
1,586,479	+				+0.2
1,586,479	+				-0.8
1,586,479	+				-0.5
1,586,479	+				+0.3
1,586,479	+				+0.6
1,586,479	+				-0.6
1,586,479	+				-1.3
1,586,480	-				-1.3
1,586,480	-				+1.2
1,586,480	-				+0.6
1,586,480	-				+1.0
1,586,480	-				-0.5
1,586,480	-				+0.6
1,586,480	-				+0.7
1,586,480	-				-0.8
1,586,480	-				+0.1
1,586,480	-				-0.4
1,586,480	-				-0.4
1,586,480	-				-0.3
1,586,480	-				+0.6
1,586,480	-				-0.4