Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5063

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
5,608,431	-		Pf1N1B4_5062	0.54	+0.2
5,608,434	-		Pf1N1B4_5062	0.54	-1.0
5,608,463	+		Pf1N1B4_5062	0.56	-0.5
5,608,463	+				+0.8
5,608,464	-				+0.8
5,608,464	-		Pf1N1B4_5062	0.56	-1.0
5,608,572	-		Pf1N1B4_5062	0.64	-0.6
5,608,779	-				+0.6
5,608,785	-		Pf1N1B4_5062	0.79	+0.9
5,608,978	-				-1.6
5,608,978	-				+0.9
5,608,989	-				+0.1
5,608,989	-				-1.6
5,609,233	-		Pf1N1B4_5063	0.16	-1.1
5,609,474	+		Pf1N1B4_5063	0.51	-0.2
5,609,474	+		Pf1N1B4_5063	0.51	+0.1
5,609,475	-		Pf1N1B4_5063	0.51	-1.5
5,609,688	+		Pf1N1B4_5063	0.82	-2.1
5,609,689	-		Pf1N1B4_5063	0.82	-1.6
5,609,689	-				+0.8
5,609,744	-				-1.4
5,609,821	+				+0.1
5,609,948	-				-1.8
5,609,948	-				-0.4
5,610,376	-		Pf1N1B4_5064	0.50	-1.5
5,610,613	-		Pf1N1B4_5064	0.75	-0.2
5,610,662	-		Pf1N1B4_5064	0.80	-0.4
5,610,774	-				-1.3
5,610,776	+				-1.6
5,610,786	+				-1.5