Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4946

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
5,479,985	+				+0.2
5,480,206	+				+0.1
5,480,206	+				+0.8
5,480,206	+				-0.4
5,480,224	+				+0.6
5,480,225	-				+0.3
5,480,282	+				+0.9
5,480,283	-				+0.1
5,480,332	+		Pf1N1B4_4945	0.38	+0.3
5,480,332	+		Pf1N1B4_4945	0.38	-1.2
5,480,333	-		Pf1N1B4_4945	0.39	+0.3
5,480,333	-				-2.0
5,480,469	+				+0.3
5,480,541	+				-0.7
5,480,542	-				+0.0
5,480,542	-				-0.2
5,480,542	-				-1.2
5,480,542	-				-0.4
5,480,542	-				+0.4
5,480,723	+		Pf1N1B4_4946	0.18	-0.2
5,480,978	+		Pf1N1B4_4946	0.40	-0.8
5,480,979	-		Pf1N1B4_4946	0.40	-1.7
5,480,979	-		Pf1N1B4_4946	0.40	-0.7
5,481,052	+		Pf1N1B4_4946	0.46	-1.0
5,481,053	-		Pf1N1B4_4946	0.46	-0.5
5,481,053	-		Pf1N1B4_4946	0.46	-1.0
5,481,245	+				-0.7
5,481,246	-		Pf1N1B4_4946	0.63	+0.6
5,481,446	+		Pf1N1B4_4946	0.80	-1.3
5,481,901	+				-1.7
5,482,165	+				+0.4
5,482,166	-				-0.1
5,482,166	-				-0.3