Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4912

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
5,441,402	-				-0.9
5,441,402	-				+0.6
5,441,441	-				+0.9
5,441,441	-				+0.5
5,441,441	-				-1.4
5,442,045	+				+0.2
5,442,125	-				+0.7
5,442,125	-				-0.5
5,442,161	-				+0.6
5,442,164	-				-0.5
5,442,303	+		Pf1N1B4_4912	0.31	-1.1
5,442,306	-		Pf1N1B4_4912	0.32	-0.1
5,442,316	-				-0.5
5,442,362	-		Pf1N1B4_4912	0.43	-1.6
5,442,443	-		Pf1N1B4_4912	0.60	+0.0
5,442,565	-		Pf1N1B4_4912	0.85	-2.1
5,442,963	+				+0.0
5,443,008	+				+1.0
5,443,009	-				+0.2
5,443,009	-				+0.1
5,443,009	-				+0.3
5,443,205	-		Pf1N1B4_4913	0.15	-0.0
5,443,419	+		Pf1N1B4_4913	0.43	-0.0
5,443,552	+		Pf1N1B4_4913	0.60	+0.5