Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4880

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
5,396,891	-		Pf1N1B4_4878	0.67	+0.6
5,396,923	+				-0.6
5,396,924	-		Pf1N1B4_4878	0.74	+0.2
5,397,288	+		Pf1N1B4_4879	0.39	-0.8
5,397,288	+		Pf1N1B4_4879	0.39	+0.7
5,397,288	+		Pf1N1B4_4879	0.39	-2.4
5,397,289	-				-1.4
5,397,289	-		Pf1N1B4_4879	0.39	-0.2
5,397,440	-				-1.2
5,397,443	+		Pf1N1B4_4879	0.80	+0.8
5,397,631	+		Pf1N1B4_4880	0.13	-1.5
5,397,856	+				-1.6
5,397,926	+				+0.4
5,397,927	-				+0.4
5,397,927	-		Pf1N1B4_4880	0.44	-0.1
5,397,981	-				+0.9
5,398,231	+		Pf1N1B4_4880	0.75	-1.0
5,398,266	+		Pf1N1B4_4880	0.79	-1.1
5,398,267	-		Pf1N1B4_4880	0.79	-0.3
5,398,370	+		Pf1N1B4_4880	0.89	-0.7
5,398,371	-		Pf1N1B4_4880	0.89	-1.6
5,398,371	-		Pf1N1B4_4880	0.89	-0.3
5,398,468	+				+0.2
5,398,468	+				-1.8
5,398,468	+				-0.1
5,398,470	+				-1.3
5,398,470	+				-0.2
5,398,471	-				-0.7
5,398,653	+		Pf1N1B4_4881	0.17	-1.6
5,398,653	+		Pf1N1B4_4881	0.17	-0.4
5,398,653	+		Pf1N1B4_4881	0.17	-0.4
5,398,653	+		Pf1N1B4_4881	0.17	+0.6
5,398,654	-		Pf1N1B4_4881	0.17	-0.5
5,398,657	+		Pf1N1B4_4881	0.17	-0.8
5,398,722	+		Pf1N1B4_4881	0.25	+0.3
5,398,824	+		Pf1N1B4_4881	0.36	-0.5
5,398,825	-		Pf1N1B4_4881	0.36	+1.4
5,398,847	+				+0.4
5,398,847	+		Pf1N1B4_4881	0.38	+0.0
5,398,982	+		Pf1N1B4_4881	0.53	-0.3
5,398,983	-				-3.2
5,398,983	-		Pf1N1B4_4881	0.53	+0.2
5,399,060	+		Pf1N1B4_4881	0.62	-0.1
5,399,060	+		Pf1N1B4_4881	0.62	-0.5
5,399,060	+		Pf1N1B4_4881	0.62	+0.2
5,399,060	+		Pf1N1B4_4881	0.62	+1.1
5,399,061	-		Pf1N1B4_4881	0.62	-1.3
5,399,097	-		Pf1N1B4_4881	0.66	-0.2
5,399,276	+		Pf1N1B4_4881	0.85	+0.9
5,399,276	+		Pf1N1B4_4881	0.85	+0.9
5,399,276	+		Pf1N1B4_4881	0.85	-0.5
5,399,277	-		Pf1N1B4_4881	0.85	+0.1
5,399,320	+				-2.0
5,399,352	+				-0.1
5,399,352	+				-1.0
5,399,353	-				-0.0
5,399,387	+				-0.3
5,399,387	+				-0.0
5,399,388	-				-1.6
5,399,388	-				+0.5
5,399,411	+				-2.0
5,399,411	+				+0.7
5,399,411	+				-0.4
5,399,416	+				+0.9