Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3820

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
4,230,394	+		Pf1N1B4_3819	0.15	+0.6
4,230,394	+		Pf1N1B4_3819	0.15	+0.6
4,230,395	-		Pf1N1B4_3819	0.15	-0.8
4,230,648	+		Pf1N1B4_3819	0.43	-0.4
4,230,651	+				+0.8
4,230,652	-		Pf1N1B4_3819	0.44	-0.2
4,230,759	-		Pf1N1B4_3819	0.56	+2.1
4,230,853	+				+1.4
4,230,853	+		Pf1N1B4_3819	0.66	-0.7
4,230,853	+		Pf1N1B4_3819	0.66	+0.4
4,230,853	+				-1.6
4,230,853	+		Pf1N1B4_3819	0.66	-1.0
4,230,854	-		Pf1N1B4_3819	0.66	-1.4
4,230,854	-		Pf1N1B4_3819	0.66	+0.4
4,230,854	-		Pf1N1B4_3819	0.66	+0.4
4,230,854	-		Pf1N1B4_3819	0.66	-0.1
4,230,854	-		Pf1N1B4_3819	0.66	-0.1
4,230,925	+		Pf1N1B4_3819	0.74	+0.4
4,230,925	+		Pf1N1B4_3819	0.74	-1.1
4,230,926	-		Pf1N1B4_3819	0.75	-0.9
4,230,926	-		Pf1N1B4_3819	0.75	-0.1
4,230,926	-				-0.4
4,231,019	-		Pf1N1B4_3819	0.85	-1.0
4,231,019	-		Pf1N1B4_3819	0.85	-1.2
4,231,151	-				-0.6
4,231,201	-				-1.4
4,231,201	-				+1.0
4,231,229	+				-1.2
4,231,229	+				-1.5
4,231,229	+				+0.0
4,231,353	+				-2.5
4,231,353	+				-0.2
4,231,436	+				-1.0
4,231,436	+				+1.4
4,231,437	-				+1.4
4,231,541	+		Pf1N1B4_3820	0.18	-1.2
4,231,542	-		Pf1N1B4_3820	0.18	-3.1
4,231,743	-		Pf1N1B4_3820	0.36	-2.4
4,231,955	+		Pf1N1B4_3820	0.55	-0.8
4,231,956	-		Pf1N1B4_3820	0.55	-0.7
4,231,956	-		Pf1N1B4_3820	0.55	-0.4
4,231,956	-		Pf1N1B4_3820	0.55	+1.0
4,232,126	+		Pf1N1B4_3820	0.70	-0.9
4,232,126	+		Pf1N1B4_3820	0.70	-2.1
4,232,126	+		Pf1N1B4_3820	0.70	-1.1
4,232,126	+		Pf1N1B4_3820	0.70	-2.0
4,232,126	+		Pf1N1B4_3820	0.70	-0.6
4,232,126	+		Pf1N1B4_3820	0.70	-0.4
4,232,126	+				+1.0
4,232,126	+		Pf1N1B4_3820	0.70	-1.2
4,232,126	+		Pf1N1B4_3820	0.70	-1.9
4,232,127	-		Pf1N1B4_3820	0.70	-2.0
4,232,127	-		Pf1N1B4_3820	0.70	-1.8
4,232,127	-		Pf1N1B4_3820	0.70	-0.1
4,232,127	-		Pf1N1B4_3820	0.70	-0.9
4,232,127	-				-0.4
4,232,127	-		Pf1N1B4_3820	0.70	+0.2
4,232,128	+		Pf1N1B4_3820	0.70	-2.5
4,232,129	-		Pf1N1B4_3820	0.70	-1.2
4,232,276	+		Pf1N1B4_3820	0.83	-3.0
4,232,276	+		Pf1N1B4_3820	0.83	-1.2
4,232,276	+		Pf1N1B4_3820	0.83	+1.0
4,232,276	+		Pf1N1B4_3820	0.83	+0.7
4,232,276	+		Pf1N1B4_3820	0.83	+0.7
4,232,276	+		Pf1N1B4_3820	0.83	-1.5
4,232,276	+		Pf1N1B4_3820	0.83	-1.4
4,232,276	+		Pf1N1B4_3820	0.83	-1.0
4,232,277	-		Pf1N1B4_3820	0.83	-1.0
4,232,277	-		Pf1N1B4_3820	0.83	-1.0
4,232,277	-		Pf1N1B4_3820	0.83	-0.0
4,232,292	-		Pf1N1B4_3820	0.85	-1.4
4,232,417	+				-1.0
4,232,417	+				-0.9
4,232,417	+				-1.0
4,232,418	-				-1.3
4,232,418	-				-1.0
4,232,418	-				+0.1
4,232,619	+				+0.1
4,232,620	-				-1.0
4,232,620	-				-0.2
4,232,646	-				+0.4
4,232,902	+				-1.0
4,232,903	-				-2.1