Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3787

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
4,195,590	-				-1.8
4,195,590	-				+0.1
4,195,590	-				-1.8
4,195,590	-				+1.7
4,195,590	-				-0.3
4,195,595	+				-0.8
4,195,595	+				+0.3
4,195,595	+				+0.3
4,195,595	+				+0.4
4,195,595	+				+0.8
4,195,595	+				+0.1
4,195,596	-				-0.3
4,195,596	-				+0.2
4,195,596	-				+0.5
4,195,596	-				-0.9
4,195,596	-				-2.8
4,195,596	-				+0.3
4,195,596	-				+2.4
4,195,596	-				+0.5
4,195,788	+		Pf1N1B4_3786	0.27	-1.2
4,195,788	+		Pf1N1B4_3786	0.27	+1.4
4,195,788	+		Pf1N1B4_3786	0.27	-0.8
4,195,789	-		Pf1N1B4_3786	0.27	-0.2
4,195,872	+				-1.2
4,195,872	+		Pf1N1B4_3786	0.42	+1.6
4,195,872	+		Pf1N1B4_3786	0.42	+0.2
4,195,872	+		Pf1N1B4_3786	0.42	+0.6
4,195,873	-		Pf1N1B4_3786	0.43	+0.8
4,195,873	-		Pf1N1B4_3786	0.43	-0.0
4,195,873	-		Pf1N1B4_3786	0.43	-0.4
4,195,873	-		Pf1N1B4_3786	0.43	+0.1
4,195,873	-		Pf1N1B4_3786	0.43	+1.2
4,195,873	-		Pf1N1B4_3786	0.43	+0.2
4,195,873	-		Pf1N1B4_3786	0.43	+0.3
4,196,022	+		Pf1N1B4_3786	0.71	-0.5
4,196,185	+				-1.9
4,196,193	+				+0.2
4,196,194	-				-1.2
4,196,228	+				-1.1
4,196,228	+				+1.1
4,196,228	+				-0.1
4,196,228	+				-0.7
4,196,228	+				-0.9
4,196,228	+				+3.0
4,196,228	+				+0.1
4,196,229	-				-2.0
4,196,238	+				+1.1
4,196,335	+		Pf1N1B4_3787	0.39	+0.6
4,196,335	+		Pf1N1B4_3787	0.39	-1.5
4,196,336	-		Pf1N1B4_3787	0.39	+1.0
4,196,336	-		Pf1N1B4_3787	0.39	-0.3
4,196,336	-		Pf1N1B4_3787	0.39	-1.3
4,196,336	-		Pf1N1B4_3787	0.39	-0.7
4,196,377	-		Pf1N1B4_3787	0.60	-0.4
4,196,377	-		Pf1N1B4_3787	0.60	-2.3
4,196,571	+				-0.3
4,196,571	+				-0.2
4,196,572	-				-0.5
4,196,705	+				+0.2
4,196,718	+				-1.1
4,196,718	+				-0.1
4,196,718	+				-0.8
4,196,719	-				-1.1
4,196,719	-				+0.4
4,196,719	-				+1.0
4,196,719	-				-0.9
4,196,724	+				+2.0
4,196,724	+				+0.2
4,196,724	+				+0.5
4,196,725	-				-0.1
4,196,725	-				-1.1
4,196,725	-				+1.1
4,196,725	-				-1.7
4,196,725	-				+0.4
4,196,977	+				-0.4
4,196,977	+				+0.4
4,196,978	-				-1.4
4,196,978	-				+0.6
4,196,994	-				+1.4
4,196,994	-				+0.1
4,197,036	+				+0.1
4,197,037	-				-1.9
4,197,037	-				-0.2
4,197,099	+				-0.9
4,197,099	+				+1.4
4,197,100	-				+1.4
4,197,100	-				+0.2
4,197,100	-				+0.4
4,197,100	-				-0.4
4,197,100	-				+0.5
4,197,100	-				-0.2
4,197,182	-				+1.4
4,197,182	-				+1.4
4,197,304	+		Pf1N1B4_3789	0.28	-1.3
4,197,304	+		Pf1N1B4_3789	0.28	-0.6
4,197,305	-		Pf1N1B4_3789	0.28	-1.4
4,197,430	+		Pf1N1B4_3789	0.65	-0.0
4,197,430	+		Pf1N1B4_3789	0.65	-0.4
4,197,431	-		Pf1N1B4_3789	0.65	-1.1
4,197,439	+		Pf1N1B4_3789	0.68	-1.2
4,197,439	+		Pf1N1B4_3789	0.68	-0.5