Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3322

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
3,708,570	+				-0.3
3,708,570	+				-0.5
3,708,570	+				-2.0
3,708,571	-				+0.0
3,708,593	+				-0.5
3,708,652	+				+0.3
3,708,652	+				-0.0
3,708,652	+				-0.7
3,708,652	+				+0.7
3,708,652	+				-1.9
3,708,652	+				-0.2
3,708,653	-				-0.3
3,708,653	-				-1.1
3,708,653	-				-0.7
3,708,654	+				+0.8
3,708,654	+				-0.5
3,708,654	+				-0.4
3,708,654	+				-0.4
3,708,654	+				-2.0
3,708,654	+				-1.5
3,708,654	+				-0.1
3,708,654	+				+1.3
3,708,655	-				+0.3
3,708,655	-				+1.3
3,708,655	-				+0.9
3,708,655	-				+1.3
3,708,655	-				-0.7
3,708,655	-				+2.3
3,708,655	-				+1.3
3,708,655	-				-0.3
3,708,655	-				-2.0
3,708,655	-				+0.7
3,708,655	-				-1.0
3,708,655	-				+2.3
3,708,665	+				-1.0
3,708,666	-				+0.3
3,708,811	+		Pf1N1B4_3320	0.51	+1.3
3,708,934	+				+0.7
3,708,934	+				-1.1
3,708,934	+				+0.1
3,708,934	+				-0.3
3,708,983	+		Pf1N1B4_3321	0.10	-1.9
3,709,236	+				+2.2
3,709,237	-		Pf1N1B4_3321	0.69	-0.4
3,709,370	+				-0.1
3,709,370	+				-1.3
3,709,370	+				-0.2
3,709,371	-				-2.5
3,709,371	-				-0.4
3,709,371	-				-1.5
3,709,371	-				-0.4
3,709,371	-				-1.8
3,709,516	+		Pf1N1B4_3322	0.11	+0.4
3,709,516	+		Pf1N1B4_3322	0.11	+0.1
3,709,516	+		Pf1N1B4_3322	0.11	+1.3
3,709,516	+		Pf1N1B4_3322	0.11	+0.1
3,709,516	+		Pf1N1B4_3322	0.11	-2.1
3,709,517	-		Pf1N1B4_3322	0.11	-1.5
3,709,517	-		Pf1N1B4_3322	0.11	+0.6
3,709,517	-		Pf1N1B4_3322	0.11	-0.0
3,709,521	-		Pf1N1B4_3322	0.11	-1.1
3,709,521	-		Pf1N1B4_3322	0.11	-1.3
3,709,521	-		Pf1N1B4_3322	0.11	-0.3
3,709,525	+		Pf1N1B4_3322	0.11	-0.5
3,709,525	+		Pf1N1B4_3322	0.11	-1.5
3,709,525	+		Pf1N1B4_3322	0.11	-1.2
3,709,526	-		Pf1N1B4_3322	0.11	+1.3
3,709,609	+		Pf1N1B4_3322	0.17	-1.1
3,709,610	-				-1.3
3,709,846	+		Pf1N1B4_3322	0.31	-1.3
3,709,903	+		Pf1N1B4_3322	0.35	-1.0
3,709,903	+				+0.3
3,709,904	-		Pf1N1B4_3322	0.35	+0.4
3,709,904	-		Pf1N1B4_3322	0.35	+0.3
3,709,904	-		Pf1N1B4_3322	0.35	-0.0
3,709,904	-		Pf1N1B4_3322	0.35	-1.3
3,709,945	+		Pf1N1B4_3322	0.37	-0.3
3,709,972	+		Pf1N1B4_3322	0.39	-0.6
3,709,972	+		Pf1N1B4_3322	0.39	-0.2
3,709,973	-		Pf1N1B4_3322	0.39	-1.3
3,710,029	+		Pf1N1B4_3322	0.43	-1.5
3,710,318	+		Pf1N1B4_3322	0.60	-0.6
3,710,318	+		Pf1N1B4_3322	0.60	-0.3
3,710,320	+		Pf1N1B4_3322	0.61	-0.7
3,710,320	+		Pf1N1B4_3322	0.61	-0.7
3,710,320	+		Pf1N1B4_3322	0.61	-2.6
3,710,320	+		Pf1N1B4_3322	0.61	-1.0
3,710,321	-		Pf1N1B4_3322	0.61	-1.0
3,710,321	-		Pf1N1B4_3322	0.61	-1.4
3,710,321	-		Pf1N1B4_3322	0.61	-1.1
3,710,321	-		Pf1N1B4_3322	0.61	-0.6
3,710,326	+		Pf1N1B4_3322	0.61	-1.5
3,710,327	-		Pf1N1B4_3322	0.61	-0.4
3,710,327	-		Pf1N1B4_3322	0.61	+0.6
3,710,379	-		Pf1N1B4_3322	0.64	-0.3
3,710,410	+		Pf1N1B4_3322	0.66	+0.3
3,710,410	+		Pf1N1B4_3322	0.66	-0.0
3,710,410	+		Pf1N1B4_3322	0.66	-1.6
3,710,410	+		Pf1N1B4_3322	0.66	-1.3
3,710,410	+		Pf1N1B4_3322	0.66	-0.0
3,710,410	+		Pf1N1B4_3322	0.66	-2.1
3,710,411	-		Pf1N1B4_3322	0.66	-1.3
3,711,041	+				+1.3
3,711,041	+				+0.6
3,711,044	+				-0.0
3,711,044	+				-0.4
3,711,044	+				+1.3
3,711,044	+				-0.0
3,711,044	+				-0.7
3,711,044	+				+2.9
3,711,044	+				+2.1
3,711,044	+				+0.3
3,711,044	+				-0.3
3,711,044	+				+0.9
3,711,044	+				+0.3
3,711,044	+				-0.7
3,711,044	+				-0.3
3,711,044	+				+1.1
3,711,044	+				-0.5
3,711,046	+				+1.3
3,711,046	+				+1.7
3,711,046	+				+1.1
3,711,046	+				-0.1
3,711,046	+				+1.3
3,711,046	+				-0.0
3,711,046	+				-1.0
3,711,048	+				+1.9
3,711,048	+				-1.7
3,711,048	+				-0.6
3,711,048	+				+1.9
3,711,048	+				-1.0
3,711,097	+				+0.1
3,711,097	+				-0.7
3,711,165	+				+2.1
3,711,165	+				+0.9
3,711,165	+				+0.3
3,711,176	+				-0.1
3,711,176	+				-2.9
3,711,224	+				-0.9
3,711,224	+				+0.3
3,711,226	+				-0.7
3,711,226	+				-0.4
3,711,226	+				-0.1
3,711,230	+				+0.7
3,711,347	+				-0.4