Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1222

Experiment: Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A
1,385,354	+		Pf1N1B4_1221	0.17	-0.1
1,385,354	+		Pf1N1B4_1221	0.17	-0.5
1,385,355	-		Pf1N1B4_1221	0.17	+1.4
1,385,355	-		Pf1N1B4_1221	0.17	-2.1
1,385,355	-		Pf1N1B4_1221	0.17	-0.4
1,385,355	-		Pf1N1B4_1221	0.17	+0.9
1,385,355	-		Pf1N1B4_1221	0.17	-1.7
1,385,441	+		Pf1N1B4_1221	0.25	+1.0
1,385,501	-		Pf1N1B4_1221	0.30	+0.4
1,385,533	+		Pf1N1B4_1221	0.33	-0.0
1,385,732	+		Pf1N1B4_1221	0.50	+0.4
1,385,732	+		Pf1N1B4_1221	0.50	-0.8
1,385,732	+		Pf1N1B4_1221	0.50	-0.8
1,385,733	-		Pf1N1B4_1221	0.50	-1.8
1,385,762	-		Pf1N1B4_1221	0.53	+0.4
1,385,872	+		Pf1N1B4_1221	0.62	-0.8
1,385,872	+		Pf1N1B4_1221	0.62	+0.0
1,385,873	-		Pf1N1B4_1221	0.62	-0.9
1,385,921	+		Pf1N1B4_1221	0.66	+0.6
1,385,921	+		Pf1N1B4_1221	0.66	+0.3
1,385,921	+		Pf1N1B4_1221	0.66	+0.2
1,385,921	+		Pf1N1B4_1221	0.66	+2.1
1,385,922	-				+2.4
1,386,138	+		Pf1N1B4_1221	0.85	-1.0
1,386,139	-		Pf1N1B4_1221	0.86	+0.8
1,386,139	-		Pf1N1B4_1221	0.86	-2.4
1,386,139	-		Pf1N1B4_1221	0.86	-0.2
1,386,426	+				-2.2
1,386,426	+				-0.9
1,386,427	-				-1.6
1,386,427	-				+1.4
1,386,501	+		Pf1N1B4_1222	0.16	-0.1
1,386,501	+		Pf1N1B4_1222	0.16	-1.0
1,386,501	+		Pf1N1B4_1222	0.16	+0.4
1,386,502	-				+0.1
1,386,502	-		Pf1N1B4_1222	0.16	+1.0
1,386,502	-		Pf1N1B4_1222	0.16	-0.8
1,386,657	+		Pf1N1B4_1222	0.33	+0.4
1,386,657	+		Pf1N1B4_1222	0.33	+0.7
1,386,741	+		Pf1N1B4_1222	0.42	-0.4
1,386,742	-		Pf1N1B4_1222	0.42	+0.6
1,386,742	-		Pf1N1B4_1222	0.42	+0.8
1,386,747	+		Pf1N1B4_1222	0.43	-0.2
1,386,747	+		Pf1N1B4_1222	0.43	+0.4
1,386,747	+		Pf1N1B4_1222	0.43	-0.6
1,386,747	+		Pf1N1B4_1222	0.43	+0.4
1,386,747	+		Pf1N1B4_1222	0.43	+0.4
1,386,747	+		Pf1N1B4_1222	0.43	-1.4
1,386,747	+		Pf1N1B4_1222	0.43	-1.3
1,386,748	-		Pf1N1B4_1222	0.43	-0.9
1,386,748	-		Pf1N1B4_1222	0.43	-1.6
1,386,748	-		Pf1N1B4_1222	0.43	-0.9
1,386,748	-		Pf1N1B4_1222	0.43	-0.3
1,386,748	-		Pf1N1B4_1222	0.43	+0.5
1,386,748	-		Pf1N1B4_1222	0.43	-1.4
1,386,748	-		Pf1N1B4_1222	0.43	+2.0
1,386,861	+		Pf1N1B4_1222	0.55	+0.5
1,386,862	-		Pf1N1B4_1222	0.55	+0.2
1,386,862	-		Pf1N1B4_1222	0.55	+1.8
1,386,862	-		Pf1N1B4_1222	0.55	+0.2
1,386,862	-		Pf1N1B4_1222	0.55	+0.4
1,386,864	+		Pf1N1B4_1222	0.55	-0.4
1,386,962	+		Pf1N1B4_1222	0.66	+2.2
1,386,962	+		Pf1N1B4_1222	0.66	-1.8
1,386,962	+		Pf1N1B4_1222	0.66	-0.1
1,386,962	+		Pf1N1B4_1222	0.66	-1.1
1,386,962	+		Pf1N1B4_1222	0.66	+0.1
1,386,962	+				-0.2
1,386,962	+		Pf1N1B4_1222	0.66	-0.5
1,386,962	+		Pf1N1B4_1222	0.66	-1.1
1,386,962	+		Pf1N1B4_1222	0.66	-1.6
1,386,962	+		Pf1N1B4_1222	0.66	-1.4
1,386,962	+		Pf1N1B4_1222	0.66	-1.8
1,386,962	+		Pf1N1B4_1222	0.66	+0.4
1,386,962	+		Pf1N1B4_1222	0.66	-2.3
1,386,962	+		Pf1N1B4_1222	0.66	+0.4
1,386,963	-		Pf1N1B4_1222	0.66	-1.3
1,386,963	-		Pf1N1B4_1222	0.66	+1.0
1,386,963	-		Pf1N1B4_1222	0.66	-0.2
1,386,963	-		Pf1N1B4_1222	0.66	+0.6
1,386,963	-		Pf1N1B4_1222	0.66	+0.6
1,386,963	-		Pf1N1B4_1222	0.66	+1.9
1,386,963	-		Pf1N1B4_1222	0.66	-0.6
1,386,963	-				-1.9
1,386,963	-		Pf1N1B4_1222	0.66	-0.7
1,386,963	-		Pf1N1B4_1222	0.66	-1.3
1,386,963	-		Pf1N1B4_1222	0.66	+1.4
1,386,963	-		Pf1N1B4_1222	0.66	+1.4
1,386,963	-		Pf1N1B4_1222	0.66	+0.5
1,386,963	-		Pf1N1B4_1222	0.66	+0.1
1,386,963	-		Pf1N1B4_1222	0.66	-0.9
1,386,963	-		Pf1N1B4_1222	0.66	+0.6
1,386,963	-		Pf1N1B4_1222	0.66	+2.0
1,386,963	-		Pf1N1B4_1222	0.66	-0.9
1,386,963	-		Pf1N1B4_1222	0.66	+1.8
1,387,162	-		Pf1N1B4_1222	0.88	+1.7
1,387,164	+		Pf1N1B4_1222	0.88	-0.0
1,387,164	+		Pf1N1B4_1222	0.88	-2.2
1,387,164	+		Pf1N1B4_1222	0.88	+0.5
1,387,164	+		Pf1N1B4_1222	0.88	-0.4
1,387,165	-		Pf1N1B4_1222	0.88	-0.5
1,387,165	-		Pf1N1B4_1222	0.88	-0.7
1,387,165	-		Pf1N1B4_1222	0.88	+0.1
1,387,165	-		Pf1N1B4_1222	0.88	-1.4
1,387,165	-		Pf1N1B4_1222	0.88	-0.2
1,387,165	-		Pf1N1B4_1222	0.88	+0.1
1,387,165	-		Pf1N1B4_1222	0.88	-0.2
1,387,253	+				-2.5
1,387,266	+				+1.4
1,387,266	+				-1.9
1,387,266	+				-0.2
1,387,441	-				+1.8
1,387,530	+		Pf1N1B4_1223	0.17	-0.4
1,387,686	+		Pf1N1B4_1223	0.31	-0.6
1,387,686	+		Pf1N1B4_1223	0.31	-0.3
1,387,686	+		Pf1N1B4_1223	0.31	+0.9
1,387,686	+		Pf1N1B4_1223	0.31	-0.5
1,387,686	+		Pf1N1B4_1223	0.31	-0.5
1,387,686	+		Pf1N1B4_1223	0.31	+3.4
1,387,686	+		Pf1N1B4_1223	0.31	+1.0
1,387,686	+		Pf1N1B4_1223	0.31	+1.6
1,387,687	-		Pf1N1B4_1223	0.31	+0.5
1,387,687	-		Pf1N1B4_1223	0.31	+0.4
1,387,687	-		Pf1N1B4_1223	0.31	-1.7
1,387,687	-		Pf1N1B4_1223	0.31	-0.8
1,387,687	-		Pf1N1B4_1223	0.31	+2.0
1,387,687	-		Pf1N1B4_1223	0.31	-0.2
1,387,687	-		Pf1N1B4_1223	0.31	-0.9
1,387,722	+		Pf1N1B4_1223	0.35	+1.4
1,387,722	+		Pf1N1B4_1223	0.35	-0.2
1,387,722	+		Pf1N1B4_1223	0.35	-1.4
1,387,722	+		Pf1N1B4_1223	0.35	-0.6
1,387,722	+		Pf1N1B4_1223	0.35	-0.7
1,387,723	-		Pf1N1B4_1223	0.35	-0.5
1,387,723	-		Pf1N1B4_1223	0.35	+0.4
1,387,723	-		Pf1N1B4_1223	0.35	-0.8
1,387,723	-		Pf1N1B4_1223	0.35	+0.1
1,387,783	-		Pf1N1B4_1223	0.40	-0.0
1,387,783	-		Pf1N1B4_1223	0.40	+2.4
1,387,861	-		Pf1N1B4_1223	0.48	-1.3
1,387,881	-		Pf1N1B4_1223	0.49	+0.8
1,387,971	+		Pf1N1B4_1223	0.58	+1.4
1,387,972	-		Pf1N1B4_1223	0.58	-0.2
1,387,972	-		Pf1N1B4_1223	0.58	-2.5
1,388,019	+		Pf1N1B4_1223	0.62	-0.9
1,388,019	+		Pf1N1B4_1223	0.62	-0.4
1,388,115	+		Pf1N1B4_1223	0.71	+1.0
1,388,116	-		Pf1N1B4_1223	0.71	-0.4
1,388,116	-		Pf1N1B4_1223	0.71	-2.3
1,388,116	-		Pf1N1B4_1223	0.71	-0.6
1,388,128	+		Pf1N1B4_1223	0.72	-1.1