Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003361

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=19_days
3,784,391	+		ABIE53_003360	0.39	-1.2
3,784,443	+		ABIE53_003360	0.42	+1.4
3,784,443	+		ABIE53_003360	0.42	-0.8
3,784,443	+		ABIE53_003360	0.42	-1.1
3,784,444	-		ABIE53_003360	0.42	+1.8
3,784,444	-		ABIE53_003360	0.42	+1.8
3,784,470	+		ABIE53_003360	0.44	+0.2
3,784,470	+		ABIE53_003360	0.44	-0.7
3,784,470	+		ABIE53_003360	0.44	-0.5
3,784,470	+		ABIE53_003360	0.44	+0.0
3,784,470	+		ABIE53_003360	0.44	+0.2
3,784,470	+		ABIE53_003360	0.44	-0.2
3,784,470	+		ABIE53_003360	0.44	-0.2
3,784,471	-		ABIE53_003360	0.44	-0.9
3,784,471	-		ABIE53_003360	0.44	-0.2
3,784,471	-		ABIE53_003360	0.44	-0.5
3,784,677	+		ABIE53_003360	0.57	-0.2
3,784,677	+		ABIE53_003360	0.57	+0.7
3,784,678	-		ABIE53_003360	0.57	+0.8
3,784,748	+		ABIE53_003360	0.62	+0.2
3,784,748	+		ABIE53_003360	0.62	+0.1
3,784,748	+		ABIE53_003360	0.62	+0.1
3,784,748	+		ABIE53_003360	0.62	-0.1
3,784,749	-		ABIE53_003360	0.62	+0.8
3,784,749	-		ABIE53_003360	0.62	-0.6
3,784,749	-		ABIE53_003360	0.62	+0.8
3,784,749	-		ABIE53_003360	0.62	-0.2
3,784,906	+		ABIE53_003360	0.72	-0.7
3,784,906	+		ABIE53_003360	0.72	-0.7
3,784,906	+		ABIE53_003360	0.72	-2.0
3,784,906	+		ABIE53_003360	0.72	-0.2
3,784,906	+		ABIE53_003360	0.72	+2.0
3,784,906	+		ABIE53_003360	0.72	-1.0
3,784,907	-		ABIE53_003360	0.72	-0.4
3,784,907	-		ABIE53_003360	0.72	+1.8
3,784,907	-		ABIE53_003360	0.72	-1.9
3,784,907	-		ABIE53_003360	0.72	+2.9
3,784,907	-		ABIE53_003360	0.72	+0.7
3,784,927	+		ABIE53_003360	0.73	-1.0
3,784,927	+		ABIE53_003360	0.73	-1.3
3,784,927	+		ABIE53_003360	0.73	-0.6
3,784,927	+		ABIE53_003360	0.73	+1.4
3,784,927	+		ABIE53_003360	0.73	-0.5
3,784,927	+		ABIE53_003360	0.73	-0.7
3,784,927	+		ABIE53_003360	0.73	-0.3
3,784,928	-		ABIE53_003360	0.73	-1.3
3,784,928	-		ABIE53_003360	0.73	-0.3
3,784,928	-		ABIE53_003360	0.73	-1.1
3,784,928	-		ABIE53_003360	0.73	+0.1
3,784,928	-		ABIE53_003360	0.73	-0.1
3,784,928	-		ABIE53_003360	0.73	-0.2
3,784,938	+		ABIE53_003360	0.74	-1.5
3,784,938	+		ABIE53_003360	0.74	-0.9
3,784,939	-		ABIE53_003360	0.74	-1.0
3,784,941	+		ABIE53_003360	0.74	-0.3
3,784,942	-		ABIE53_003360	0.74	+1.0
3,785,036	+		ABIE53_003360	0.80	-0.2
3,785,036	+		ABIE53_003360	0.80	+0.0
3,785,037	-		ABIE53_003360	0.80	-2.4
3,785,037	-		ABIE53_003360	0.80	+0.8
3,785,213	+				-1.5
3,785,213	+				-1.4
3,785,259	+				+1.9
3,785,259	+				-0.3
3,785,260	-				+0.5
3,785,260	-				+0.3
3,785,260	-				-1.7
3,785,260	-				-0.1
3,785,464	+		ABIE53_003361	0.10	-1.1
3,785,464	+		ABIE53_003361	0.10	-1.5
3,785,465	-		ABIE53_003361	0.10	-4.2
3,785,680	+		ABIE53_003361	0.33	-1.3
3,785,681	-		ABIE53_003361	0.33	+0.3
3,785,681	-		ABIE53_003361	0.33	-3.1
3,785,684	+		ABIE53_003361	0.33	-2.5
3,785,684	+		ABIE53_003361	0.33	-2.0
3,785,691	-		ABIE53_003361	0.34	-0.7
3,785,794	+		ABIE53_003361	0.44	-1.3
3,785,795	-		ABIE53_003361	0.44	-1.3
3,785,831	+		ABIE53_003361	0.48	-0.5
3,785,831	+		ABIE53_003361	0.48	-2.4
3,785,831	+		ABIE53_003361	0.48	-1.0
3,785,832	-		ABIE53_003361	0.48	-0.7
3,785,832	-		ABIE53_003361	0.48	-3.6
3,785,832	-		ABIE53_003361	0.48	-1.7
3,786,011	+		ABIE53_003361	0.67	-2.8
3,786,011	+		ABIE53_003361	0.67	-3.0
3,786,011	+		ABIE53_003361	0.67	-2.4
3,786,011	+		ABIE53_003361	0.67	+0.3
3,786,012	-		ABIE53_003361	0.67	-0.7
3,786,012	-		ABIE53_003361	0.67	-1.7
3,786,015	-		ABIE53_003361	0.67	-1.1
3,786,015	-		ABIE53_003361	0.67	+0.9
3,786,080	+		ABIE53_003361	0.74	-3.1
3,786,080	+		ABIE53_003361	0.74	-1.7
3,786,081	-		ABIE53_003361	0.74	+0.5
3,786,211	+		ABIE53_003361	0.87	-1.6
3,786,324	+				-2.0
3,786,532	+		ABIE53_003362	0.43	+0.9
3,786,532	+		ABIE53_003362	0.43	-2.0
3,786,532	+		ABIE53_003362	0.43	-2.6
3,786,532	+		ABIE53_003362	0.43	-1.5
3,786,532	+		ABIE53_003362	0.43	+2.3
3,786,532	+		ABIE53_003362	0.43	-3.7
3,786,533	-		ABIE53_003362	0.43	-0.5
3,786,533	-		ABIE53_003362	0.43	-1.9
3,786,533	-		ABIE53_003362	0.43	-0.2
3,786,533	-		ABIE53_003362	0.43	+0.4
3,786,533	-		ABIE53_003362	0.43	-0.5
3,786,533	-		ABIE53_003362	0.43	+1.6
3,786,533	-		ABIE53_003362	0.43	+0.4
3,786,533	-		ABIE53_003362	0.43	+0.7
3,786,533	-		ABIE53_003362	0.43	+0.2
3,786,646	+		ABIE53_003362	0.67	-2.5
3,786,647	-		ABIE53_003362	0.67	+2.4
3,786,647	-		ABIE53_003362	0.67	-0.2
3,786,721	+		ABIE53_003362	0.83	-3.6
3,786,721	+		ABIE53_003362	0.83	-0.7
3,786,722	-		ABIE53_003362	0.83	+0.9
3,786,722	-		ABIE53_003362	0.83	-1.0
3,786,722	-		ABIE53_003362	0.83	+0.3
3,786,825	+				-1.2
3,786,825	+				+1.9
3,786,825	+				+0.9
3,786,825	+				-1.1
3,786,825	+				-1.0
3,786,825	+				-1.0
3,786,825	+				-1.3
3,786,825	+				-1.3
3,786,825	+				-0.2
3,786,825	+				-1.8
3,786,825	+				-0.5
3,786,825	+				+1.3
3,786,825	+				-1.1
3,786,825	+				-0.1
3,786,825	+				-1.1
3,786,825	+				+0.5
3,786,826	-				-2.9
3,786,826	-				-0.1
3,786,826	-				+0.4
3,786,826	-				+0.3
3,786,826	-				-0.5
3,786,826	-				-1.0
3,786,826	-				-0.1
3,786,843	+				-0.1
3,786,844	-				+1.6
3,786,844	-				+2.3
3,787,033	+		ABIE53_003363	0.15	-1.0
3,787,196	+		ABIE53_003363	0.29	-0.5
3,787,196	+		ABIE53_003363	0.29	+0.3
3,787,197	-		ABIE53_003363	0.29	+0.2
3,787,197	-		ABIE53_003363	0.29	-0.7
3,787,197	-		ABIE53_003363	0.29	+1.8
3,787,197	-		ABIE53_003363	0.29	+0.5
3,787,262	+		ABIE53_003363	0.34	+0.3
3,787,263	-		ABIE53_003363	0.34	-0.2
3,787,263	-		ABIE53_003363	0.34	+1.6
3,787,263	-		ABIE53_003363	0.34	+1.8
3,787,269	+		ABIE53_003363	0.34	-1.5
3,787,269	+		ABIE53_003363	0.34	-2.2
3,787,269	+		ABIE53_003363	0.34	-1.0
3,787,269	+		ABIE53_003363	0.34	-0.8
3,787,269	+		ABIE53_003363	0.34	-1.6
3,787,269	+		ABIE53_003363	0.34	+0.7
3,787,269	+		ABIE53_003363	0.34	+0.8
3,787,269	+		ABIE53_003363	0.34	+0.2
3,787,269	+		ABIE53_003363	0.34	+0.3
3,787,269	+		ABIE53_003363	0.34	+0.8
3,787,269	+		ABIE53_003363	0.34	-0.4
3,787,269	+		ABIE53_003363	0.34	-1.5
3,787,270	-		ABIE53_003363	0.35	-1.7
3,787,270	-		ABIE53_003363	0.35	+0.4
3,787,270	-		ABIE53_003363	0.35	-0.6
3,787,270	-		ABIE53_003363	0.35	+2.4
3,787,270	-		ABIE53_003363	0.35	-0.0
3,787,270	-		ABIE53_003363	0.35	-0.5
3,787,270	-		ABIE53_003363	0.35	+1.3
3,787,270	-		ABIE53_003363	0.35	-1.4
3,787,292	+		ABIE53_003363	0.36	+0.2
3,787,293	-		ABIE53_003363	0.36	-0.3
3,787,293	-		ABIE53_003363	0.36	-0.5
3,787,293	-		ABIE53_003363	0.36	-0.1