Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19835

Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet; sample=FecalPellet; mouse5; day2
2,244,006	-		BBR_RS19830	0.17	-1.0
2,244,006	-		BBR_RS19830	0.17	+0.8
2,244,006	-		BBR_RS19830	0.17	-0.1
2,244,020	+		BBR_RS19830	0.19	-2.8
2,244,020	+		BBR_RS19830	0.19	+0.1
2,244,028	-		BBR_RS19830	0.20	+1.0
2,244,043	+		BBR_RS19830	0.21	-0.0
2,244,044	+		BBR_RS19830	0.22	-0.2
2,244,052	-		BBR_RS19830	0.23	-0.3
2,244,052	-		BBR_RS19830	0.23	+0.3
2,244,052	-		BBR_RS19830	0.23	+0.4
2,244,059	+		BBR_RS19830	0.23	+0.8
2,244,076	+		BBR_RS19830	0.25	-1.0
2,244,083	-		BBR_RS19830	0.26	+0.0
2,244,101	+		BBR_RS19830	0.28	+0.6
2,244,104	-		BBR_RS19830	0.29	+0.9
2,244,108	+		BBR_RS19830	0.29	+0.8
2,244,116	-		BBR_RS19830	0.30	-0.9
2,244,148	-		BBR_RS19830	0.34	-0.6
2,244,148	-		BBR_RS19830	0.34	+0.8
2,244,160	-		BBR_RS19830	0.35	+0.9
2,244,164	-		BBR_RS19830	0.36	-0.9
2,244,166	+		BBR_RS19830	0.36	+0.2
2,244,174	-		BBR_RS19830	0.37	+0.9
2,244,183	+		BBR_RS19830	0.38	+0.4
2,244,196	-		BBR_RS19830	0.39	-0.4
2,244,199	+		BBR_RS19830	0.40	-2.1
2,244,207	-		BBR_RS19830	0.41	+0.2
2,244,211	+		BBR_RS19830	0.41	-2.8
2,244,253	-		BBR_RS19830	0.46	-0.9
2,244,253	-		BBR_RS19830	0.46	-0.8
2,244,265	-		BBR_RS19830	0.47	-2.0
2,244,278	-		BBR_RS19830	0.49	-0.7
2,244,295	+		BBR_RS19830	0.51	-0.6
2,244,298	-		BBR_RS19830	0.51	-0.3
2,244,308	-		BBR_RS19830	0.52	+0.5
2,244,308	-		BBR_RS19830	0.52	+1.1
2,244,308	-		BBR_RS19830	0.52	+0.2
2,244,308	-		BBR_RS19830	0.52	+0.0
2,244,308	-		BBR_RS19830	0.52	-0.0
2,244,308	-		BBR_RS19830	0.52	+0.3
2,244,308	-		BBR_RS19830	0.52	+0.7
2,244,358	+		BBR_RS19830	0.58	-0.5
2,244,378	+		BBR_RS19830	0.60	+1.0
2,244,386	-		BBR_RS19830	0.61	+0.5
2,244,386	-		BBR_RS19830	0.61	-0.4
2,244,391	-		BBR_RS19830	0.62	+0.4
2,244,415	+		BBR_RS19830	0.65	+0.6
2,244,415	+		BBR_RS19830	0.65	-0.8
2,244,428	-		BBR_RS19830	0.66	+1.0
2,244,446	-		BBR_RS19830	0.68	+0.3
2,244,475	+		BBR_RS19830	0.72	+1.9
2,244,475	-		BBR_RS19830	0.72	+0.5
2,244,482	-		BBR_RS19830	0.72	+0.1
2,244,488	+		BBR_RS19830	0.73	+0.4
2,244,492	-		BBR_RS19830	0.74	-0.6
2,244,494	-		BBR_RS19830	0.74	-0.2
2,244,494	-		BBR_RS19830	0.74	-0.2
2,244,542	+		BBR_RS19830	0.79	+0.3
2,244,557	-		BBR_RS19830	0.81	+1.5
2,244,570	-		BBR_RS19830	0.83	-0.6
2,244,570	-		BBR_RS19830	0.83	-1.2
2,244,592	+		BBR_RS19830	0.85	-0.3
2,244,596	-		BBR_RS19830	0.86	+0.4
2,244,598	-		BBR_RS19830	0.86	+0.7
2,244,600	-		BBR_RS19830	0.86	+1.0
2,244,600	-		BBR_RS19830	0.86	+0.3
2,244,645	+				+0.2
2,244,645	+				-0.7
2,244,650	+				+0.2
2,244,650	+				+0.1
2,244,650	+				+0.1
2,244,653	-				+0.4
2,244,653	-				+0.2
2,244,653	-				+1.1
2,244,653	-				-2.1
2,244,658	-				-0.2
2,244,664	-				-0.9
2,244,664	-				+0.9
2,244,674	-				+0.2
2,244,679	+				-0.6
2,244,679	+				+0.4
2,244,707	-				+0.4
2,244,716	-				+1.0
2,244,718	+				-0.6
2,244,718	+				-0.3
2,244,727	+				-1.0
2,244,729	-				-0.7
2,244,729	-				+0.5
2,244,738	+				+0.1
2,244,760	+				+2.0
2,244,773	+				+0.9
2,244,773	+				-0.9
2,244,773	+				-0.1
2,244,773	+				+0.5
2,244,781	-				-0.0
2,244,781	-				+0.1
2,244,781	-				+0.2
2,244,794	-				+0.1
2,244,800	-				+0.3
2,244,800	-				+1.5
2,244,803	-				+0.3
2,244,810	-				-0.7
2,244,842	-				-0.3
2,244,845	-				-1.1
2,244,852	-				-0.0
2,244,853	+				+1.2
2,244,853	+				+0.4
2,244,861	-				-0.3
2,244,871	-				+0.2
2,244,871	-				+0.8
2,244,915	+				-0.6
2,244,931	-				-0.4
2,244,933	+				+0.0
2,244,935	+				-0.2
2,244,939	-				+0.1
2,244,941	-				-0.2
2,244,943	-				-0.6
2,244,943	-				+0.8
2,244,972	+				+0.6
2,244,972	-				+0.9
2,244,980	-				+0.7
2,244,985	-				-0.4
2,244,986	-				+0.4
2,244,986	-				-1.9
2,244,987	+				+0.1
2,245,023	+				-1.7
2,245,039	+				-0.8
2,245,053	+				-0.4
2,245,056	-				+0.6
2,245,060	-				+0.5
2,245,061	-				+0.8
2,245,066	-				+0.4
2,245,079	-				+0.3
2,245,088	+				+0.5
2,245,088	-				+0.3
2,245,088	-				+0.6
2,245,116	-				+1.3
2,245,136	+				+0.5
2,245,148	-				+0.2
2,247,291	-				+0.5
2,247,315	-				-0.3
2,247,393	-				-1.4
2,247,423	+				-0.2
2,247,423	+				-0.1
2,247,424	-				-0.4
2,247,431	-				+0.0
2,247,434	-				-2.1
2,247,439	+				-0.1
2,247,451	+				-0.6
2,247,451	+				-0.2
2,247,459	-				-1.2
2,247,471	-				-0.3
2,247,494	+				+0.1
2,247,536	-				-0.3
2,247,562	+				+0.2
2,247,562	+				+0.7
2,247,562	+				-2.6
2,247,562	+				+1.1
2,247,562	+				-0.5
2,247,562	+				+2.0
2,247,570	-				+0.6
2,247,570	-				-0.1
2,247,570	-				-0.2
2,247,570	-				+0.2
2,247,570	-				+0.3
2,247,574	+				-0.4
2,247,580	-				-0.8
2,247,582	+				+0.6
2,247,582	-				-0.6
2,247,582	-				+0.1
2,247,584	+				+0.4
2,247,600	-				-0.4
2,247,607	+				+0.1
2,247,607	+				-3.2
2,247,609	+				-1.3
2,247,609	+				-0.9
2,247,609	+				-1.9
2,247,609	+				-0.3
2,247,609	+				+0.7
2,247,609	+				+0.5
2,247,609	+				+1.2
2,247,609	+				+1.8
2,247,611	+				-0.5
2,247,611	+				-0.8
2,247,611	+				+1.5
2,247,611	+				-0.4
2,247,611	+				-0.1
2,247,617	+				-1.0
2,247,617	-				-0.3
2,247,617	-				-2.4
2,247,617	-				+0.6
2,247,617	-				+0.8
2,247,617	-				-0.4
2,247,617	-				+0.3
2,247,617	-				+0.7
2,247,617	-				-3.1
2,247,617	-				+0.7
2,247,618	+				+1.2
2,247,619	+				+1.0
2,247,619	+				+1.5
2,247,619	+				+0.3
2,247,619	+				+2.1
2,247,619	+				-0.8
2,247,624	+				+0.6
2,247,626	+				+1.1
2,247,626	-				+1.2
2,247,627	-				-1.5
2,247,627	-				-1.0
2,247,627	-				-1.1
2,247,627	-				-1.4
2,247,627	-				-0.5
2,247,627	-				+0.4
2,247,627	-				-0.7
2,247,627	-				-0.1
2,247,627	-				+0.7
2,247,627	-				+0.4
2,247,627	-				+0.7
2,247,627	-				-1.7
2,247,631	+				-0.3
2,247,632	-				-0.1
2,247,639	+				+0.4
2,247,647	-				+0.4
2,247,654	+				-0.1
2,247,674	+				+0.1
2,247,674	+				+1.8
2,247,674	+				-0.2
2,247,674	+				-0.1
2,247,674	+				-0.8
2,247,682	-				-1.2
2,247,682	-				-0.3
2,247,682	-				+1.5
2,247,690	+				+0.9
2,247,701	+				-1.0
2,247,701	+				-0.4
2,247,701	+				-0.7
2,247,701	+				-0.9
2,247,701	+				-0.9
2,247,701	-				-0.1
2,247,709	-		BBR_RS19840	0.10	+0.5
2,247,709	-		BBR_RS19840	0.10	-0.5
2,247,711	-		BBR_RS19840	0.10	+0.3
2,247,718	-		BBR_RS19840	0.11	-0.5
2,247,718	-		BBR_RS19840	0.11	-0.1
2,247,720	-		BBR_RS19840	0.11	+0.3
2,247,720	-		BBR_RS19840	0.11	-0.2
2,247,722	+		BBR_RS19840	0.11	+0.9
2,247,722	-		BBR_RS19840	0.11	+0.2
2,247,722	-		BBR_RS19840	0.11	+1.2
2,247,732	-		BBR_RS19840	0.12	-0.1
2,247,739	+		BBR_RS19840	0.13	+0.7
2,247,741	+		BBR_RS19840	0.13	+1.1
2,247,746	+		BBR_RS19840	0.14	+0.3
2,247,746	+		BBR_RS19840	0.14	-0.6
2,247,746	+		BBR_RS19840	0.14	+0.2
2,247,748	-		BBR_RS19840	0.14	-0.7
2,247,749	-		BBR_RS19840	0.14	-2.7
2,247,749	-		BBR_RS19840	0.14	+0.2
2,247,751	+		BBR_RS19840	0.14	-0.5
2,247,751	+		BBR_RS19840	0.14	-0.3
2,247,751	+		BBR_RS19840	0.14	-1.7
2,247,751	+		BBR_RS19840	0.14	-0.6
2,247,754	-		BBR_RS19840	0.15	-1.3
2,247,759	-		BBR_RS19840	0.15	-0.7
2,247,759	-		BBR_RS19840	0.15	+0.3
2,247,759	-		BBR_RS19840	0.15	+0.3
2,247,759	-		BBR_RS19840	0.15	-2.3
2,247,771	+		BBR_RS19840	0.17	-1.0
2,247,771	+		BBR_RS19840	0.17	-0.9
2,247,772	+		BBR_RS19840	0.17	-1.0
2,247,779	-		BBR_RS19840	0.17	-1.1
2,247,833	+		BBR_RS19840	0.23	+0.8
2,247,835	+		BBR_RS19840	0.23	+0.3
2,247,858	+		BBR_RS19840	0.26	-1.7
2,247,858	+		BBR_RS19840	0.26	-0.5
2,247,863	+		BBR_RS19840	0.26	-0.2
2,247,866	-		BBR_RS19840	0.26	+0.3
2,247,877	-		BBR_RS19840	0.28	+0.7
2,247,877	-		BBR_RS19840	0.28	-0.6
2,247,877	-		BBR_RS19840	0.28	-0.0
2,247,886	+		BBR_RS19840	0.29	+0.4
2,247,894	-		BBR_RS19840	0.29	-0.9
2,247,894	-		BBR_RS19840	0.29	+0.4
2,247,894	-		BBR_RS19840	0.29	-0.0
2,247,910	+		BBR_RS19840	0.31	-0.1
2,247,918	+		BBR_RS19840	0.32	+0.3
2,247,918	+		BBR_RS19840	0.32	+0.1
2,247,918	-		BBR_RS19840	0.32	+1.3
2,247,924	-		BBR_RS19840	0.33	+0.9
2,247,930	+		BBR_RS19840	0.33	+0.5
2,247,930	+		BBR_RS19840	0.33	+0.4
2,247,932	+		BBR_RS19840	0.33	-1.2
2,247,958	+		BBR_RS19840	0.36	-0.5
2,247,960	+		BBR_RS19840	0.36	+0.3
2,247,960	+		BBR_RS19840	0.36	-0.7
2,247,960	+		BBR_RS19840	0.36	-0.3
2,247,960	+		BBR_RS19840	0.36	+0.0
2,247,968	-		BBR_RS19840	0.37	-0.6
2,247,987	-		BBR_RS19840	0.39	-0.0
2,247,997	-		BBR_RS19840	0.40	-0.4
2,248,003	+		BBR_RS19840	0.41	-1.3
2,248,008	+		BBR_RS19840	0.41	+1.4
2,248,016	-		BBR_RS19840	0.42	+0.5
2,248,017	-		BBR_RS19840	0.42	-0.2
2,248,028	-		BBR_RS19840	0.43	+1.3
2,248,034	-		BBR_RS19840	0.44	-1.0
2,248,053	+		BBR_RS19840	0.46	+0.1
2,248,061	+		BBR_RS19840	0.47	-1.1
2,248,068	-		BBR_RS19840	0.47	+0.9
2,248,069	-		BBR_RS19840	0.48	+0.6
2,248,069	-		BBR_RS19840	0.48	+0.1
2,248,069	-		BBR_RS19840	0.48	+0.5
2,248,069	-		BBR_RS19840	0.48	-0.5
2,248,069	-		BBR_RS19840	0.48	-3.4
2,248,069	-		BBR_RS19840	0.48	+1.3
2,248,073	+		BBR_RS19840	0.48	+0.0
2,248,078	+		BBR_RS19840	0.49	+1.0
2,248,088	+		BBR_RS19840	0.50	-0.8
2,248,091	-		BBR_RS19840	0.50	+0.4
2,248,096	-		BBR_RS19840	0.50	-0.8
2,248,096	-		BBR_RS19840	0.50	+0.7
2,248,101	-		BBR_RS19840	0.51	+0.5
2,248,111	+		BBR_RS19840	0.52	+1.2
2,248,126	+		BBR_RS19840	0.54	+0.3
2,248,126	+		BBR_RS19840	0.54	-1.7
2,248,126	+		BBR_RS19840	0.54	+0.9
2,248,134	-		BBR_RS19840	0.54	-2.6
2,248,134	-		BBR_RS19840	0.54	+0.3
2,248,149	-		BBR_RS19840	0.56	+0.5
2,248,166	+		BBR_RS19840	0.58	+1.0
2,248,174	-		BBR_RS19840	0.59	+0.4
2,248,176	+		BBR_RS19840	0.59	+0.2
2,248,176	+		BBR_RS19840	0.59	+0.9
2,248,187	-		BBR_RS19840	0.60	-0.7
2,248,190	+		BBR_RS19840	0.60	+1.4
2,248,198	-		BBR_RS19840	0.61	-0.5
2,248,198	-		BBR_RS19840	0.61	-1.0
2,248,198	-		BBR_RS19840	0.61	-1.4
2,248,208	+		BBR_RS19840	0.62	-1.1
2,248,219	-		BBR_RS19840	0.63	+1.0
2,248,219	-		BBR_RS19840	0.63	-1.2
2,248,259	+		BBR_RS19840	0.67	-0.2
2,248,272	-		BBR_RS19840	0.69	+1.3
2,248,310	+		BBR_RS19840	0.73	-0.2
2,248,313	-		BBR_RS19840	0.73	-0.4
2,248,326	-		BBR_RS19840	0.74	-0.4
2,248,326	-		BBR_RS19840	0.74	-1.0
2,248,337	+		BBR_RS19840	0.76	+0.6
2,248,347	+		BBR_RS19840	0.77	+1.1
2,248,347	+		BBR_RS19840	0.77	-0.3
2,248,356	+		BBR_RS19840	0.78	-1.4
2,248,357	+		BBR_RS19840	0.78	-0.6
2,248,357	+		BBR_RS19840	0.78	+0.7
2,248,358	+		BBR_RS19840	0.78	-3.7
2,248,380	-		BBR_RS19840	0.80	+0.9
2,248,380	-		BBR_RS19840	0.80	-0.1
2,248,380	-		BBR_RS19840	0.80	+0.4
2,248,390	-		BBR_RS19840	0.81	+0.4
2,248,397	-		BBR_RS19840	0.82	+2.3
2,248,397	-		BBR_RS19840	0.82	-1.0