Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12885

Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12875 and BBR_RS12880 are separated by 111 nucleotidesBBR_RS12880 and BBR_RS12885 are separated by 128 nucleotidesBBR_RS12885 and BBR_RS12890 are separated by 144 nucleotides BBR_RS12875: BBR_RS12875 - lipoate--protein ligase A, at 638,944 to 640,107 _RS12875 BBR_RS12880: BBR_RS12880 - Crp/Fnr family transcriptional regulator, at 640,219 to 640,938 _RS12880 BBR_RS12885: BBR_RS12885 - penicillin-binding protein, at 641,067 to 643,337 _RS12885 BBR_RS12890: BBR_RS12890 - NADH:flavin oxidoreductase/NADH oxidase, at 643,482 to 644,786 _RS12890 Position (kb) 641 642 643 644Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 640.071 kb on + strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.079 kb on - strandat 640.125 kb on - strandat 640.204 kb on + strandat 640.204 kb on + strandat 640.204 kb on + strandat 640.204 kb on + strandat 640.209 kb on + strandat 640.212 kb on - strandat 640.212 kb on - strandat 640.212 kb on - strandat 640.224 kb on - strandat 640.269 kb on + strandat 640.271 kb on + strandat 640.281 kb on + strandat 640.281 kb on + strandat 640.289 kb on - strandat 640.327 kb on - strand, within BBR_RS12880at 640.379 kb on - strand, within BBR_RS12880at 640.394 kb on + strand, within BBR_RS12880at 640.398 kb on - strand, within BBR_RS12880at 640.413 kb on + strand, within BBR_RS12880at 640.421 kb on - strand, within BBR_RS12880at 640.463 kb on + strand, within BBR_RS12880at 640.483 kb on - strand, within BBR_RS12880at 640.527 kb on + strand, within BBR_RS12880at 640.563 kb on + strand, within BBR_RS12880at 640.585 kb on + strand, within BBR_RS12880at 640.622 kb on + strand, within BBR_RS12880at 640.622 kb on + strand, within BBR_RS12880at 640.635 kb on + strand, within BBR_RS12880at 640.643 kb on - strand, within BBR_RS12880at 640.673 kb on + strand, within BBR_RS12880at 640.678 kb on + strand, within BBR_RS12880at 640.686 kb on + strand, within BBR_RS12880at 640.696 kb on - strand, within BBR_RS12880at 640.710 kb on + strand, within BBR_RS12880at 640.717 kb on + strand, within BBR_RS12880at 640.718 kb on - strand, within BBR_RS12880at 640.722 kb on + strand, within BBR_RS12880at 640.747 kb on - strand, within BBR_RS12880at 640.761 kb on - strand, within BBR_RS12880at 640.787 kb on + strand, within BBR_RS12880at 640.787 kb on + strand, within BBR_RS12880at 640.808 kb on - strand, within BBR_RS12880at 640.809 kb on + strand, within BBR_RS12880at 640.828 kb on + strand, within BBR_RS12880at 640.882 kb on - strandat 640.940 kb on - strandat 640.988 kb on + strandat 640.996 kb on - strandat 641.038 kb on - strandat 641.050 kb on - strandat 643.189 kb on + strandat 643.218 kb on + strandat 643.244 kb on - strandat 643.246 kb on + strandat 643.254 kb on - strandat 643.340 kb on - strandat 643.346 kb on + strandat 643.454 kb on + strandat 643.604 kb on + strandat 643.655 kb on - strand, within BBR_RS12890at 643.673 kb on + strand, within BBR_RS12890at 643.673 kb on + strand, within BBR_RS12890at 643.673 kb on + strand, within BBR_RS12890at 643.673 kb on + strand, within BBR_RS12890at 643.673 kb on + strand, within BBR_RS12890at 643.705 kb on + strand, within BBR_RS12890at 643.705 kb on + strand, within BBR_RS12890at 643.713 kb on - strand, within BBR_RS12890at 643.713 kb on - strand, within BBR_RS12890at 643.713 kb on - strand, within BBR_RS12890at 643.715 kb on + strand, within BBR_RS12890at 643.723 kb on + strand, within BBR_RS12890at 643.738 kb on + strand, within BBR_RS12890at 643.738 kb on + strand, within BBR_RS12890at 643.746 kb on - strand, within BBR_RS12890at 643.746 kb on - strand, within BBR_RS12890at 643.746 kb on - strand, within BBR_RS12890at 643.782 kb on + strand, within BBR_RS12890at 643.829 kb on + strand, within BBR_RS12890at 643.848 kb on - strand, within BBR_RS12890at 643.855 kb on + strand, within BBR_RS12890at 643.865 kb on + strand, within BBR_RS12890at 643.877 kb on + strand, within BBR_RS12890at 643.879 kb on + strand, within BBR_RS12890at 643.882 kb on + strand, within BBR_RS12890at 643.901 kb on - strand, within BBR_RS12890at 643.911 kb on - strand, within BBR_RS12890at 643.911 kb on - strand, within BBR_RS12890at 643.913 kb on + strand, within BBR_RS12890at 643.913 kb on + strand, within BBR_RS12890at 643.982 kb on + strand, within BBR_RS12890at 643.990 kb on - strand, within BBR_RS12890at 643.996 kb on + strand, within BBR_RS12890at 644.027 kb on + strand, within BBR_RS12890at 644.029 kb on - strand, within BBR_RS12890at 644.029 kb on - strand, within BBR_RS12890at 644.035 kb on - strand, within BBR_RS12890at 644.039 kb on - strand, within BBR_RS12890at 644.068 kb on - strand, within BBR_RS12890at 644.096 kb on - strand, within BBR_RS12890at 644.098 kb on + strand, within BBR_RS12890at 644.098 kb on + strand, within BBR_RS12890at 644.158 kb on - strand, within BBR_RS12890at 644.158 kb on - strand, within BBR_RS12890at 644.174 kb on + strand, within BBR_RS12890at 644.174 kb on + strand, within BBR_RS12890at 644.183 kb on - strand, within BBR_RS12890at 644.244 kb on + strand, within BBR_RS12890at 644.244 kb on + strand, within BBR_RS12890at 644.267 kb on + strand, within BBR_RS12890at 644.300 kb on - strand, within BBR_RS12890at 644.313 kb on + strand, within BBR_RS12890at 644.321 kb on - strand, within BBR_RS12890at 644.321 kb on - strand, within BBR_RS12890

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse5; day2
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640,071 + +1.0
640,079 - -0.4
640,079 - -0.1
640,079 - -0.8
640,079 - -0.0
640,079 - -0.0
640,125 - +1.0
640,204 + +0.9
640,204 + +1.7
640,204 + +1.8
640,204 + +1.3
640,209 + +0.3
640,212 - -1.3
640,212 - -0.6
640,212 - -0.0
640,224 - -3.5
640,269 + -1.6
640,271 + -1.4
640,281 + -3.8
640,281 + -3.7
640,289 - -0.5
640,327 - BBR_RS12880 0.15 -4.2
640,379 - BBR_RS12880 0.22 -3.4
640,394 + BBR_RS12880 0.24 -1.1
640,398 - BBR_RS12880 0.25 -2.5
640,413 + BBR_RS12880 0.27 -2.0
640,421 - BBR_RS12880 0.28 -0.4
640,463 + BBR_RS12880 0.34 -4.5
640,483 - BBR_RS12880 0.37 -2.5
640,527 + BBR_RS12880 0.43 -1.6
640,563 + BBR_RS12880 0.48 -2.8
640,585 + BBR_RS12880 0.51 -3.0
640,622 + BBR_RS12880 0.56 -2.6
640,622 + BBR_RS12880 0.56 -4.2
640,635 + BBR_RS12880 0.58 -2.6
640,643 - BBR_RS12880 0.59 -1.0
640,673 + BBR_RS12880 0.63 -1.5
640,678 + BBR_RS12880 0.64 -2.0
640,686 + BBR_RS12880 0.65 -3.5
640,696 - BBR_RS12880 0.66 -0.8
640,710 + BBR_RS12880 0.68 -2.0
640,717 + BBR_RS12880 0.69 -3.6
640,718 - BBR_RS12880 0.69 -3.1
640,722 + BBR_RS12880 0.70 -2.7
640,747 - BBR_RS12880 0.73 -1.1
640,761 - BBR_RS12880 0.75 -2.4
640,787 + BBR_RS12880 0.79 -4.2
640,787 + BBR_RS12880 0.79 -3.2
640,808 - BBR_RS12880 0.82 -2.6
640,809 + BBR_RS12880 0.82 -4.0
640,828 + BBR_RS12880 0.85 -3.2
640,882 - -2.6
640,940 - -0.6
640,988 + +0.2
640,996 - +1.0
641,038 - -0.5
641,050 - -3.5
643,189 + +1.3
643,218 + -4.2
643,244 - -2.9
643,246 + -0.7
643,254 - +1.7
643,340 - -0.0
643,346 + -0.5
643,454 + -1.8
643,604 + +0.5
643,655 - BBR_RS12890 0.13 -1.7
643,673 + BBR_RS12890 0.15 -0.5
643,673 + BBR_RS12890 0.15 +0.4
643,673 + BBR_RS12890 0.15 -1.0
643,673 + BBR_RS12890 0.15 +0.1
643,673 + BBR_RS12890 0.15 -0.4
643,705 + BBR_RS12890 0.17 +1.2
643,705 + BBR_RS12890 0.17 +0.1
643,713 - BBR_RS12890 0.18 +0.3
643,713 - BBR_RS12890 0.18 -0.7
643,713 - BBR_RS12890 0.18 +1.2
643,715 + BBR_RS12890 0.18 -1.7
643,723 + BBR_RS12890 0.18 +0.0
643,738 + BBR_RS12890 0.20 +0.9
643,738 + BBR_RS12890 0.20 +0.7
643,746 - BBR_RS12890 0.20 +0.5
643,746 - BBR_RS12890 0.20 -0.8
643,746 - BBR_RS12890 0.20 +0.2
643,782 + BBR_RS12890 0.23 +1.2
643,829 + BBR_RS12890 0.27 +1.5
643,848 - BBR_RS12890 0.28 -0.1
643,855 + BBR_RS12890 0.29 +0.7
643,865 + BBR_RS12890 0.29 +0.8
643,877 + BBR_RS12890 0.30 +0.6
643,879 + BBR_RS12890 0.30 -1.0
643,882 + BBR_RS12890 0.31 -0.5
643,901 - BBR_RS12890 0.32 -0.4
643,911 - BBR_RS12890 0.33 -0.6
643,911 - BBR_RS12890 0.33 -0.6
643,913 + BBR_RS12890 0.33 +0.3
643,913 + BBR_RS12890 0.33 -0.7
643,982 + BBR_RS12890 0.38 +1.1
643,990 - BBR_RS12890 0.39 +0.8
643,996 + BBR_RS12890 0.39 +0.3
644,027 + BBR_RS12890 0.42 +1.6
644,029 - BBR_RS12890 0.42 -0.7
644,029 - BBR_RS12890 0.42 -1.8
644,035 - BBR_RS12890 0.42 -0.9
644,039 - BBR_RS12890 0.43 +0.9
644,068 - BBR_RS12890 0.45 +1.5
644,096 - BBR_RS12890 0.47 +1.5
644,098 + BBR_RS12890 0.47 -0.1
644,098 + BBR_RS12890 0.47 +0.9
644,158 - BBR_RS12890 0.52 +0.2
644,158 - BBR_RS12890 0.52 -1.1
644,174 + BBR_RS12890 0.53 +0.6
644,174 + BBR_RS12890 0.53 -0.1
644,183 - BBR_RS12890 0.54 -1.8
644,244 + BBR_RS12890 0.58 +0.3
644,244 + BBR_RS12890 0.58 +0.9
644,267 + BBR_RS12890 0.60 -0.1
644,300 - BBR_RS12890 0.63 -0.8
644,313 + BBR_RS12890 0.64 +0.6
644,321 - BBR_RS12890 0.64 +1.0
644,321 - BBR_RS12890 0.64 -3.7

Or see this region's nucleotide sequence