Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12440 and BBR_RS20695 are separated by 42 nucleotides BBR_RS20695 and BBR_RS12445 are separated by 433 nucleotides BBR_RS12445 and BBR_RS12450 are separated by 168 nucleotides
BBR_RS12440: BBR_RS12440 - Permease of ABC transporter system, at 539,673 to 541,463
_RS12440
BBR_RS20695: BBR_RS20695 - hypothetical protein, at 541,506 to 541,820
_RS20695
BBR_RS12445: BBR_RS12445 - 50S ribosomal protein L19, at 542,254 to 542,619
_RS12445
BBR_RS12450: BBR_RS12450 - signal peptidase I, at 542,788 to 543,711
_RS12450
Position (kb) 542
543 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 541.260 kb on + strand, within BBR_RS12440 at 541.268 kb on - strand, within BBR_RS12440 at 541.268 kb on - strand, within BBR_RS12440 at 541.283 kb on + strand, within BBR_RS12440 at 541.347 kb on - strand at 541.364 kb on + strand at 541.371 kb on + strand at 541.379 kb on + strand at 541.383 kb on + strand at 541.396 kb on - strand at 541.430 kb on - strand at 541.430 kb on - strand at 541.470 kb on + strand at 541.570 kb on - strand, within BBR_RS20695 at 541.661 kb on + strand, within BBR_RS20695 at 541.689 kb on + strand, within BBR_RS20695 at 541.710 kb on + strand, within BBR_RS20695 at 541.711 kb on - strand, within BBR_RS20695 at 541.783 kb on + strand, within BBR_RS20695 at 541.847 kb on - strand at 541.864 kb on + strand at 541.888 kb on + strand at 541.889 kb on + strand at 541.930 kb on + strand at 541.932 kb on - strand at 541.941 kb on + strand at 541.941 kb on + strand at 541.948 kb on + strand at 541.968 kb on + strand at 542.011 kb on - strand at 542.717 kb on - strand at 542.753 kb on + strand at 542.760 kb on - strand at 542.760 kb on - strand at 542.771 kb on - strand at 542.779 kb on + strand at 542.789 kb on + strand at 542.796 kb on - strand at 542.796 kb on - strand at 542.798 kb on + strand at 542.821 kb on + strand at 542.821 kb on + strand at 542.848 kb on + strand at 542.850 kb on + strand at 542.850 kb on + strand at 542.856 kb on - strand at 542.875 kb on + strand at 542.875 kb on + strand at 543.000 kb on + strand, within BBR_RS12450 at 543.017 kb on + strand, within BBR_RS12450 at 543.036 kb on + strand, within BBR_RS12450 at 543.102 kb on - strand, within BBR_RS12450 at 543.104 kb on + strand, within BBR_RS12450 at 543.603 kb on + strand, within BBR_RS12450
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse5; day2 remove 541,260 + BBR_RS12440 0.89 -4.0 541,268 - BBR_RS12440 0.89 +0.1 541,268 - BBR_RS12440 0.89 +0.0 541,283 + BBR_RS12440 0.90 -1.3 541,347 - +0.2 541,364 + -1.1 541,371 + +0.7 541,379 + -0.7 541,383 + -0.4 541,396 - +0.8 541,430 - -0.5 541,430 - +1.0 541,470 + +0.6 541,570 - BBR_RS20695 0.20 +0.1 541,661 + BBR_RS20695 0.49 +1.3 541,689 + BBR_RS20695 0.58 +0.0 541,710 + BBR_RS20695 0.65 +1.9 541,711 - BBR_RS20695 0.65 -1.1 541,783 + BBR_RS20695 0.88 -0.6 541,847 - -0.3 541,864 + -0.2 541,888 + +2.0 541,889 + -1.9 541,930 + +0.9 541,932 - -0.1 541,941 + +0.8 541,941 + -1.8 541,948 + -0.0 541,968 + +2.1 542,011 - -1.9 542,717 - -0.5 542,753 + +0.5 542,760 - -2.3 542,760 - -0.4 542,771 - -0.2 542,779 + -0.1 542,789 + -2.0 542,796 - +0.6 542,796 - +0.1 542,798 + -1.8 542,821 + -3.4 542,821 + -4.3 542,848 + -0.4 542,850 + -2.0 542,850 + +0.9 542,856 - -2.4 542,875 + -2.3 542,875 + -4.2 543,000 + BBR_RS12450 0.23 +1.1 543,017 + BBR_RS12450 0.25 -3.7 543,036 + BBR_RS12450 0.27 -1.4 543,102 - BBR_RS12450 0.34 -3.0 543,104 + BBR_RS12450 0.34 -2.5 543,603 + BBR_RS12450 0.88 -4.0
Or see this region's nucleotide sequence