Experiment: diet=StandardDiet; sample=FecalPellet; mouse5; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS20680 and BBR_RS12235 are separated by 86 nucleotides BBR_RS12235 and BBR_RS12240 are separated by 129 nucleotides BBR_RS12240 and BBR_RS20685 overlap by 40 nucleotides BBR_RS20685 and BBR_RS12245 are separated by 40 nucleotides
BBR_RS20680: BBR_RS20680 - hypothetical protein, at 494,405 to 494,641
_RS20680
BBR_RS12235: BBR_RS12235 - hypothetical protein, at 494,728 to 495,414
_RS12235
BBR_RS12240: BBR_RS12240 - 30S ribosomal protein S15, at 495,544 to 495,813
_RS12240
BBR_RS20685: BBR_RS20685 - hypothetical protein, at 495,774 to 496,049
_RS20685
BBR_RS12245: BBR_RS12245 - polyribonucleotide nucleotidyltransferase, at 496,090 to 498,801
_RS12245
Position (kb) 495
496 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 494.588 kb on + strand, within BBR_RS20680 at 494.604 kb on + strand, within BBR_RS20680 at 494.618 kb on - strand at 494.626 kb on + strand at 494.626 kb on + strand at 494.628 kb on - strand at 494.634 kb on - strand at 494.636 kb on - strand at 494.636 kb on - strand at 494.657 kb on - strand at 494.672 kb on + strand at 494.676 kb on + strand at 494.684 kb on - strand at 494.716 kb on + strand at 494.726 kb on + strand at 494.731 kb on + strand at 494.733 kb on + strand at 494.755 kb on + strand at 494.787 kb on + strand at 494.787 kb on + strand at 494.871 kb on + strand, within BBR_RS12235 at 495.834 kb on + strand, within BBR_RS20685 at 495.840 kb on + strand, within BBR_RS20685 at 495.845 kb on + strand, within BBR_RS20685 at 495.845 kb on + strand, within BBR_RS20685 at 495.845 kb on + strand, within BBR_RS20685 at 495.892 kb on + strand, within BBR_RS20685 at 495.893 kb on + strand, within BBR_RS20685 at 495.893 kb on + strand, within BBR_RS20685 at 495.911 kb on + strand, within BBR_RS20685 at 495.927 kb on - strand, within BBR_RS20685 at 495.941 kb on - strand, within BBR_RS20685 at 495.988 kb on + strand, within BBR_RS20685 at 496.029 kb on + strand at 496.031 kb on + strand at 496.416 kb on - strand, within BBR_RS12245
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse5; day2 remove 494,588 + BBR_RS20680 0.77 +1.5 494,604 + BBR_RS20680 0.84 -0.3 494,618 - +0.3 494,626 + +0.3 494,626 + +0.3 494,628 - +0.9 494,634 - +1.3 494,636 - +1.3 494,636 - +0.8 494,657 - -0.6 494,672 + -1.6 494,676 + -2.2 494,684 - -0.8 494,716 + -3.8 494,726 + -4.3 494,731 + -4.2 494,733 + -0.6 494,755 + -3.2 494,787 + +0.3 494,787 + +0.4 494,871 + BBR_RS12235 0.21 -3.4 495,834 + BBR_RS20685 0.22 +0.4 495,840 + BBR_RS20685 0.24 -1.9 495,845 + BBR_RS20685 0.26 +0.3 495,845 + BBR_RS20685 0.26 -0.7 495,845 + BBR_RS20685 0.26 +0.1 495,892 + BBR_RS20685 0.43 +1.2 495,893 + BBR_RS20685 0.43 +0.4 495,893 + BBR_RS20685 0.43 -1.8 495,911 + BBR_RS20685 0.50 +0.2 495,927 - BBR_RS20685 0.55 -0.7 495,941 - BBR_RS20685 0.61 -2.4 495,988 + BBR_RS20685 0.78 +0.9 496,029 + +0.1 496,031 + -0.9 496,416 - BBR_RS12245 0.12 +0.9
Or see this region's nucleotide sequence