Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3994

Experiment: Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT3992 and BT3993 are separated by 118 nucleotidesBT3993 and BT3994 are separated by 27 nucleotidesBT3994 and BT3995 are separated by 232 nucleotides BT3992: BT3992 - putative anti-sigma factor (NCBI ptt file), at 5,201,306 to 5,202,235 BT3992 BT3993: BT3993 - RNA polymerase ECF-type sigma factor (NCBI ptt file), at 5,202,354 to 5,202,908 BT3993 BT3994: BT3994 - putative alpha-1,2-mannosidase (NCBI ptt file), at 5,202,936 to 5,205,167 BT3994 BT3995: BT3995 - alanyl-tRNA synthetase (NCBI ptt file), at 5,205,400 to 5,208,018 BT3995 Position (kb) 5202 5203 5204 5205 5206Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5201.977 kb on - strand, within BT3992at 5202.008 kb on + strand, within BT3992at 5202.034 kb on - strand, within BT3992at 5202.052 kb on + strand, within BT3992at 5202.053 kb on - strand, within BT3992at 5202.053 kb on - strand, within BT3992at 5202.100 kb on - strand, within BT3992at 5202.100 kb on - strand, within BT3992at 5202.323 kb on - strandat 5202.323 kb on - strandat 5202.350 kb on - strandat 5202.427 kb on + strand, within BT3993at 5202.427 kb on + strand, within BT3993at 5202.431 kb on + strand, within BT3993at 5202.431 kb on + strand, within BT3993at 5202.431 kb on + strand, within BT3993at 5202.431 kb on + strand, within BT3993at 5202.432 kb on - strand, within BT3993at 5202.432 kb on - strand, within BT3993at 5202.432 kb on - strand, within BT3993at 5202.502 kb on + strand, within BT3993at 5202.502 kb on + strand, within BT3993at 5202.605 kb on + strand, within BT3993at 5202.619 kb on + strand, within BT3993at 5202.676 kb on - strand, within BT3993at 5202.676 kb on - strand, within BT3993at 5202.680 kb on + strand, within BT3993at 5202.680 kb on + strand, within BT3993at 5202.750 kb on + strand, within BT3993at 5202.757 kb on - strand, within BT3993at 5202.784 kb on - strand, within BT3993at 5202.841 kb on + strand, within BT3993at 5202.842 kb on - strand, within BT3993at 5202.883 kb on + strandat 5202.883 kb on + strandat 5202.923 kb on - strandat 5202.969 kb on + strandat 5203.033 kb on + strandat 5203.111 kb on - strandat 5203.167 kb on - strand, within BT3994at 5203.170 kb on + strand, within BT3994at 5203.205 kb on - strand, within BT3994at 5203.229 kb on - strand, within BT3994at 5203.341 kb on + strand, within BT3994at 5203.363 kb on - strand, within BT3994at 5203.518 kb on + strand, within BT3994at 5203.518 kb on + strand, within BT3994at 5203.518 kb on + strand, within BT3994at 5203.519 kb on - strand, within BT3994at 5203.519 kb on - strand, within BT3994at 5203.568 kb on + strand, within BT3994at 5203.616 kb on + strand, within BT3994at 5203.617 kb on - strand, within BT3994at 5203.698 kb on + strand, within BT3994at 5203.741 kb on + strand, within BT3994at 5203.742 kb on - strand, within BT3994at 5203.742 kb on - strand, within BT3994at 5203.756 kb on + strand, within BT3994at 5203.821 kb on - strand, within BT3994at 5203.827 kb on + strand, within BT3994at 5203.838 kb on - strand, within BT3994at 5203.838 kb on - strand, within BT3994at 5203.856 kb on - strand, within BT3994at 5203.878 kb on + strand, within BT3994at 5203.918 kb on - strand, within BT3994at 5203.919 kb on + strand, within BT3994at 5203.931 kb on - strand, within BT3994at 5203.938 kb on + strand, within BT3994at 5204.046 kb on + strand, within BT3994at 5204.047 kb on - strand, within BT3994at 5204.077 kb on + strand, within BT3994at 5204.078 kb on - strand, within BT3994at 5204.105 kb on - strand, within BT3994at 5204.132 kb on - strand, within BT3994at 5204.228 kb on - strand, within BT3994at 5204.238 kb on - strand, within BT3994at 5204.252 kb on + strand, within BT3994at 5204.465 kb on + strand, within BT3994at 5204.748 kb on - strand, within BT3994at 5204.767 kb on - strand, within BT3994at 5204.773 kb on + strand, within BT3994at 5204.848 kb on + strand, within BT3994at 5205.072 kb on + strandat 5205.086 kb on - strandat 5205.132 kb on - strandat 5205.148 kb on - strandat 5205.152 kb on - strandat 5205.152 kb on - strandat 5205.152 kb on - strandat 5205.189 kb on + strandat 5205.201 kb on + strandat 5205.268 kb on + strandat 5205.377 kb on - strandat 5205.385 kb on + strandat 5205.386 kb on - strandat 5205.386 kb on - strandat 5205.386 kb on - strandat 5205.386 kb on - strandat 5205.386 kb on - strandat 5205.390 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM
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5,201,977 - BT3992 0.72 -0.6
5,202,008 + BT3992 0.75 +0.0
5,202,034 - BT3992 0.78 -1.3
5,202,052 + BT3992 0.80 +0.0
5,202,053 - BT3992 0.80 -1.0
5,202,053 - BT3992 0.80 -1.9
5,202,100 - BT3992 0.85 +0.0
5,202,100 - BT3992 0.85 +2.6
5,202,323 - -2.0
5,202,323 - +1.6
5,202,350 - -0.4
5,202,427 + BT3993 0.13 -1.5
5,202,427 + BT3993 0.13 -1.0
5,202,431 + BT3993 0.14 -0.4
5,202,431 + BT3993 0.14 -0.6
5,202,431 + BT3993 0.14 -0.9
5,202,431 + BT3993 0.14 +1.6
5,202,432 - BT3993 0.14 -1.0
5,202,432 - BT3993 0.14 +1.5
5,202,432 - BT3993 0.14 -1.6
5,202,502 + BT3993 0.27 -2.0
5,202,502 + BT3993 0.27 +0.0
5,202,605 + BT3993 0.45 +3.0
5,202,619 + BT3993 0.48 -0.9
5,202,676 - BT3993 0.58 -1.0
5,202,676 - BT3993 0.58 -3.0
5,202,680 + BT3993 0.59 -3.2
5,202,680 + BT3993 0.59 -1.2
5,202,750 + BT3993 0.71 +0.5
5,202,757 - BT3993 0.73 -1.6
5,202,784 - BT3993 0.77 -2.0
5,202,841 + BT3993 0.88 +0.0
5,202,842 - BT3993 0.88 -1.0
5,202,883 + +1.6
5,202,883 + -0.4
5,202,923 - +0.3
5,202,969 + -0.8
5,203,033 + -2.8
5,203,111 - +2.3
5,203,167 - BT3994 0.10 -1.3
5,203,170 + BT3994 0.10 +1.1
5,203,205 - BT3994 0.12 +2.6
5,203,229 - BT3994 0.13 -1.0
5,203,341 + BT3994 0.18 +0.0
5,203,363 - BT3994 0.19 -4.2
5,203,518 + BT3994 0.26 +0.0
5,203,518 + BT3994 0.26 -1.0
5,203,518 + BT3994 0.26 -0.2
5,203,519 - BT3994 0.26 -1.1
5,203,519 - BT3994 0.26 +2.1
5,203,568 + BT3994 0.28 +0.6
5,203,616 + BT3994 0.30 -1.6
5,203,617 - BT3994 0.31 -1.0
5,203,698 + BT3994 0.34 -1.0
5,203,741 + BT3994 0.36 -2.5
5,203,742 - BT3994 0.36 +2.6
5,203,742 - BT3994 0.36 +1.0
5,203,756 + BT3994 0.37 -2.6
5,203,821 - BT3994 0.40 -2.0
5,203,827 + BT3994 0.40 +0.0
5,203,838 - BT3994 0.40 -3.7
5,203,838 - BT3994 0.40 +0.0
5,203,856 - BT3994 0.41 +2.5
5,203,878 + BT3994 0.42 +1.2
5,203,918 - BT3994 0.44 -0.2
5,203,919 + BT3994 0.44 -1.0
5,203,931 - BT3994 0.45 +1.0
5,203,938 + BT3994 0.45 +0.0
5,204,046 + BT3994 0.50 +0.0
5,204,047 - BT3994 0.50 +0.0
5,204,077 + BT3994 0.51 -2.0
5,204,078 - BT3994 0.51 +1.0
5,204,105 - BT3994 0.52 -2.0
5,204,132 - BT3994 0.54 -2.0
5,204,228 - BT3994 0.58 +0.0
5,204,238 - BT3994 0.58 -1.1
5,204,252 + BT3994 0.59 -1.0
5,204,465 + BT3994 0.69 +0.0
5,204,748 - BT3994 0.81 -2.3
5,204,767 - BT3994 0.82 -3.2
5,204,773 + BT3994 0.82 -1.6
5,204,848 + BT3994 0.86 +0.0
5,205,072 + -3.7
5,205,086 - -1.0
5,205,132 - -2.8
5,205,148 - -0.8
5,205,152 - -0.7
5,205,152 - +0.8
5,205,152 - -1.8
5,205,189 + -2.3
5,205,201 + -1.4
5,205,268 + -0.6
5,205,377 - +0.4
5,205,385 + +2.0
5,205,386 - -0.4
5,205,386 - -2.6
5,205,386 - -2.6
5,205,386 - -2.0
5,205,386 - -1.0
5,205,390 + -1.5

Or see this region's nucleotide sequence