Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3505

Experiment: Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant_medium_Glucose with Thioridazine 0.025 mM
4,518,780	+		BT3504	0.39	-0.1
4,518,784	-		BT3504	0.39	-2.4
4,518,784	-		BT3504	0.39	-2.1
4,518,820	-		BT3504	0.42	+1.2
4,518,827	+		BT3504	0.42	-0.1
4,518,828	-		BT3504	0.42	-2.1
4,518,828	-		BT3504	0.42	-3.2
4,518,836	-		BT3504	0.43	-1.5
4,518,853	+		BT3504	0.44	+0.9
4,518,853	+		BT3504	0.44	-0.1
4,518,856	-		BT3504	0.44	-2.4
4,518,856	-		BT3504	0.44	-1.4
4,518,863	+		BT3504	0.44	-2.4
4,518,875	-		BT3504	0.45	-1.1
4,518,906	-		BT3504	0.47	-2.2
4,518,906	-		BT3504	0.47	-0.1
4,518,907	+		BT3504	0.47	-0.7
4,518,909	+		BT3504	0.47	-0.1
4,518,913	-		BT3504	0.48	-5.7
4,518,985	-		BT3504	0.52	-2.4
4,518,993	+		BT3504	0.53	-2.4
4,518,997	-		BT3504	0.53	-1.9
4,519,022	-		BT3504	0.55	-0.9
4,519,030	-		BT3504	0.55	-0.7
4,519,033	+		BT3504	0.55	-1.1
4,519,110	+		BT3504	0.60	-0.2
4,519,145	+		BT3504	0.62	-1.1
4,519,146	-		BT3504	0.63	-0.2
4,519,204	+		BT3504	0.66	-0.7
4,519,235	-		BT3504	0.68	-0.4
4,519,235	-		BT3504	0.68	-0.7
4,519,235	-		BT3504	0.68	-1.4
4,519,276	-		BT3504	0.71	+0.6
4,519,306	-		BT3504	0.73	+1.3
4,519,320	+		BT3504	0.74	-1.1
4,519,347	+		BT3504	0.75	+0.5
4,519,347	+		BT3504	0.75	-2.4
4,519,348	-		BT3504	0.76	+2.2
4,519,354	-		BT3504	0.76	-3.1
4,519,449	+		BT3504	0.82	+1.9
4,519,449	+		BT3504	0.82	+0.5
4,519,450	-		BT3504	0.82	+2.2
4,519,472	+		BT3504	0.83	-1.1
4,519,574	+				-0.1
4,519,574	+				+1.9
4,519,617	-				-0.5
4,519,635	+				+0.5
4,519,689	+				-0.4
4,519,745	-				-2.8
4,519,956	+				-1.1
4,520,023	-				-1.7
4,520,049	+				+0.3
4,520,067	+		BT3505	0.10	+0.9
4,520,075	-		BT3505	0.11	-2.0
4,520,112	+		BT3505	0.12	-0.1
4,520,159	-		BT3505	0.13	+1.9
4,520,159	-		BT3505	0.13	-1.1
4,520,194	+		BT3505	0.14	+1.5
4,520,247	+		BT3505	0.16	+0.1
4,520,285	+		BT3505	0.17	-1.3
4,520,288	-		BT3505	0.17	+0.6
4,520,288	-		BT3505	0.17	-0.1
4,520,329	+		BT3505	0.19	-0.1
4,520,383	+		BT3505	0.20	-2.1
4,520,384	-		BT3505	0.20	-0.7
4,520,384	-		BT3505	0.20	+0.8
4,520,384	-		BT3505	0.20	-2.7
4,520,388	-		BT3505	0.21	+0.3
4,520,388	-		BT3505	0.21	-1.1
4,520,415	+		BT3505	0.21	-1.1
4,520,415	+		BT3505	0.21	+0.4
4,520,423	-		BT3505	0.22	-1.9
4,520,477	-		BT3505	0.23	-2.1
4,520,480	+		BT3505	0.24	-0.1
4,520,481	-		BT3505	0.24	-2.1
4,520,482	+		BT3505	0.24	-4.4
4,520,486	-		BT3505	0.24	-0.7
4,520,495	-		BT3505	0.24	-2.7
4,520,599	-		BT3505	0.27	-1.6
4,520,659	-		BT3505	0.29	-1.1
4,520,741	+		BT3505	0.32	-2.9
4,520,741	+		BT3505	0.32	-2.6
4,520,744	-		BT3505	0.32	+2.3
4,520,758	+		BT3505	0.32	+2.3
4,520,762	+		BT3505	0.33	-0.7
4,520,765	-		BT3505	0.33	-1.7
4,520,792	+		BT3505	0.34	+0.3
4,520,831	-		BT3505	0.35	-1.9
4,520,845	-		BT3505	0.35	-1.6
4,520,845	-		BT3505	0.35	+0.2
4,520,845	-		BT3505	0.35	-2.7
4,520,845	-		BT3505	0.35	+1.9
4,520,845	-		BT3505	0.35	-1.3
4,520,845	-		BT3505	0.35	-3.4
4,520,849	-		BT3505	0.35	-2.2
4,520,875	-		BT3505	0.36	-0.1
4,520,878	+		BT3505	0.36	-0.2
4,520,880	+		BT3505	0.36	-0.1
4,520,902	+		BT3505	0.37	-1.6
4,520,934	+		BT3505	0.38	-0.6
4,520,978	+		BT3505	0.39	-1.1
4,520,979	-		BT3505	0.40	+2.1
4,520,979	-		BT3505	0.40	-1.7
4,520,979	-		BT3505	0.40	-1.7
4,520,981	+		BT3505	0.40	-1.8
4,520,982	-		BT3505	0.40	-2.1
4,521,002	-		BT3505	0.40	-1.4
4,521,147	+		BT3505	0.45	-1.3
4,521,147	+		BT3505	0.45	-1.8
4,521,148	-		BT3505	0.45	+2.9
4,521,162	-		BT3505	0.45	-0.6
4,521,167	-		BT3505	0.46	-0.1
4,521,179	-		BT3505	0.46	-0.9
4,521,179	-		BT3505	0.46	+1.2
4,521,213	-		BT3505	0.47	-1.1
4,521,229	+		BT3505	0.48	-2.2
4,521,250	+		BT3505	0.48	-1.7
4,521,251	-		BT3505	0.48	+2.1
4,521,251	-		BT3505	0.48	+0.1
4,521,251	-		BT3505	0.48	-0.1
4,521,275	+		BT3505	0.49	+0.9
4,521,275	+		BT3505	0.49	+0.1
4,521,298	+		BT3505	0.50	-0.4
4,521,299	-		BT3505	0.50	-0.6
4,521,299	-		BT3505	0.50	-0.1
4,521,331	-		BT3505	0.51	-3.1
4,521,386	+		BT3505	0.53	+0.3
4,521,397	+		BT3505	0.53	-3.8
4,521,414	+		BT3505	0.53	-1.4
4,521,434	-		BT3505	0.54	-0.1
4,521,444	+		BT3505	0.54	-2.3
4,521,483	-		BT3505	0.56	+0.2
4,521,495	-		BT3505	0.56	-3.7
4,521,646	+		BT3505	0.61	-1.4
4,521,656	+		BT3505	0.61	+0.5
4,521,657	-		BT3505	0.61	-0.1
4,521,657	-		BT3505	0.61	-0.1
4,521,667	+		BT3505	0.62	+1.9
4,521,672	+		BT3505	0.62	-2.2
4,521,683	-		BT3505	0.62	-0.7
4,521,710	+		BT3505	0.63	-0.9
4,521,715	-		BT3505	0.63	-2.4
4,521,715	-		BT3505	0.63	+1.9
4,521,716	+		BT3505	0.63	-1.7
4,521,717	-		BT3505	0.63	-2.1
4,521,717	-		BT3505	0.63	-0.7
4,521,717	-		BT3505	0.63	-0.3
4,521,719	-		BT3505	0.63	-0.3
4,521,721	+		BT3505	0.63	-1.7
4,521,722	-		BT3505	0.63	-2.7
4,521,722	-		BT3505	0.63	-0.1
4,521,722	-		BT3505	0.63	+3.5
4,521,724	-		BT3505	0.63	+0.3
4,521,737	+		BT3505	0.64	-0.2
4,521,740	-		BT3505	0.64	-0.2
4,521,740	-		BT3505	0.64	+0.6
4,521,762	-		BT3505	0.65	-2.1
4,521,762	-		BT3505	0.65	-0.1
4,521,768	-		BT3505	0.65	-1.6
4,521,805	-		BT3505	0.66	-2.5
4,521,805	-		BT3505	0.66	-1.7
4,521,815	+		BT3505	0.66	+2.0
4,521,816	-		BT3505	0.66	-0.7
4,521,832	+		BT3505	0.67	-0.1
4,521,841	+		BT3505	0.67	-1.9
4,521,842	-		BT3505	0.67	+1.2
4,521,842	-		BT3505	0.67	-0.5
4,521,937	+		BT3505	0.70	-1.1
4,521,938	-		BT3505	0.70	-3.4
4,521,938	-		BT3505	0.70	-1.7
4,521,997	+		BT3505	0.72	-2.1
4,522,051	+		BT3505	0.74	-2.1
4,522,095	+		BT3505	0.75	-1.1
4,522,096	-		BT3505	0.75	-1.3
4,522,100	+		BT3505	0.75	-1.0
4,522,101	-		BT3505	0.75	-2.9
4,522,102	+		BT3505	0.75	-1.7
4,522,105	+		BT3505	0.76	-2.1
4,522,105	+		BT3505	0.76	-0.1
4,522,151	+		BT3505	0.77	-2.9
4,522,152	-		BT3505	0.77	-2.2
4,522,152	-		BT3505	0.77	+0.6
4,522,157	+		BT3505	0.77	-0.2
4,522,311	+		BT3505	0.82	-1.1
4,522,345	+		BT3505	0.83	+0.9
4,522,360	-		BT3505	0.84	-0.1
4,522,360	-		BT3505	0.84	+0.9
4,522,364	+		BT3505	0.84	-0.4
4,522,364	+		BT3505	0.84	-2.7
4,522,365	-		BT3505	0.84	-0.1
4,522,448	+		BT3505	0.87	-0.9
4,522,449	-		BT3505	0.87	-1.5
4,522,453	+		BT3505	0.87	+0.2
4,522,454	-		BT3505	0.87	-2.5
4,522,461	+		BT3505	0.87	+0.9
4,522,461	+		BT3505	0.87	-1.1
4,522,462	-		BT3505	0.87	-0.9
4,522,499	-		BT3505	0.88	-0.1
4,522,504	+		BT3505	0.88	-1.4
4,522,509	+		BT3505	0.89	+1.7
4,522,510	-		BT3505	0.89	-1.6
4,522,510	-		BT3505	0.89	-1.7
4,522,510	-		BT3505	0.89	-2.0
4,522,525	-		BT3505	0.89	-0.7
4,522,561	+				-0.5
4,522,562	-				-1.2
4,522,599	-				-0.7
4,522,631	-				-1.0
4,522,656	-				-0.1
4,522,687	+				-0.1
4,522,704	+				-2.5
4,522,730	-				+0.1
4,522,736	-				+2.9
4,522,740	-				-1.0
4,522,763	-				-0.6
4,522,772	-				-1.6
4,522,852	-				-1.1
4,522,859	-				-2.7
4,522,872	-				-1.7
4,522,900	+				-2.3
4,522,908	+				-1.1
4,522,976	-				-2.3
4,523,122	+		BT3506	0.11	-0.4
4,523,122	+		BT3506	0.11	-0.2
4,523,127	-		BT3506	0.12	+1.7
4,523,179	+		BT3506	0.14	-2.4
4,523,180	-		BT3506	0.14	+0.2
4,523,201	+		BT3506	0.15	-1.1
4,523,212	+		BT3506	0.16	-2.4
4,523,213	-		BT3506	0.16	-4.0
4,523,217	-		BT3506	0.16	-0.1
4,523,217	-		BT3506	0.16	-1.1
4,523,219	-		BT3506	0.16	-0.9
4,523,219	-		BT3506	0.16	-2.7
4,523,269	-		BT3506	0.18	-1.7
4,523,269	-		BT3506	0.18	-2.1
4,523,326	+		BT3506	0.21	+0.9
4,523,399	-		BT3506	0.24	+1.9
4,523,421	-		BT3506	0.25	-1.1
4,523,421	-		BT3506	0.25	-2.1
4,523,446	+		BT3506	0.27	+1.2
4,523,456	-		BT3506	0.27	-2.1
4,523,463	-		BT3506	0.27	-1.1
4,523,481	-		BT3506	0.28	+0.9
4,523,481	-		BT3506	0.28	-1.1
4,523,482	+		BT3506	0.28	-1.4
4,523,483	-		BT3506	0.28	-2.1
4,523,522	+		BT3506	0.30	+1.6
4,523,533	+		BT3506	0.31	-1.4
4,523,533	+		BT3506	0.31	-0.7
4,523,539	+		BT3506	0.31	+0.5
4,523,539	+		BT3506	0.31	-0.2
4,523,543	+		BT3506	0.31	-1.7
4,523,543	+		BT3506	0.31	+0.4
4,523,544	-		BT3506	0.31	-1.8
4,523,549	-		BT3506	0.31	-0.4
4,523,550	+		BT3506	0.31	+1.2
4,523,592	-		BT3506	0.33	-2.5
4,523,611	+		BT3506	0.34	-0.4
4,523,624	-		BT3506	0.35	-1.2
4,523,642	+		BT3506	0.36	-0.5
4,523,643	-		BT3506	0.36	-0.1
4,523,696	-		BT3506	0.38	-2.8
4,523,749	-		BT3506	0.41	-0.3
4,523,773	-		BT3506	0.42	+1.5
4,523,792	-		BT3506	0.43	-1.9