Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_853

Experiment: Nitrate reduction, replicate A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_851 and Pf1N1B4_852 overlap by 8 nucleotidesPf1N1B4_852 and Pf1N1B4_853 are separated by 40 nucleotidesPf1N1B4_853 and Pf1N1B4_854 are separated by 37 nucleotides Pf1N1B4_851 - Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB), at 980,514 to 981,665 _851 Pf1N1B4_852 - Mlr7403 protein, at 981,658 to 982,299 _852 Pf1N1B4_853 - Histidyl-tRNA synthetase (EC 6.1.1.21), at 982,340 to 983,629 _853 Pf1N1B4_854 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC 1.17.7.1), at 983,667 to 984,776 _854 Position (kb) 982 983 984Strain fitness (log2 ratio) -1 0 1at 981.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A
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981,698 - -0.2

Or see this region's nucleotide sequence