Experiment: Nitrate reduction, replicate A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_725 and Pf1N1B4_726 are separated by 194 nucleotides Pf1N1B4_726 and Pf1N1B4_727 are separated by 49 nucleotides Pf1N1B4_727 and Pf1N1B4_728 are separated by 247 nucleotides
Pf1N1B4_725 - PAP2 superfamily protein, at 828,448 to 829,191
_725
Pf1N1B4_726 - Heat shock protein 60 family chaperone GroEL, at 829,386 to 831,029
_726
Pf1N1B4_727 - Heat shock protein 60 family co-chaperone GroES, at 831,079 to 831,372
_727
Pf1N1B4_728 - FxsA protein, at 831,620 to 832,096
_728
Position (kb) 829
830
831
832 Strain fitness (log2 ratio) -2
-1
0
1
2 at 828.497 kb on + strand at 828.583 kb on + strand, within Pf1N1B4_725 at 828.583 kb on + strand, within Pf1N1B4_725 at 828.584 kb on - strand at 828.622 kb on + strand, within Pf1N1B4_725 at 828.622 kb on + strand, within Pf1N1B4_725 at 828.623 kb on - strand, within Pf1N1B4_725 at 828.623 kb on - strand, within Pf1N1B4_725 at 828.859 kb on + strand, within Pf1N1B4_725 at 828.860 kb on - strand, within Pf1N1B4_725 at 828.860 kb on - strand, within Pf1N1B4_725 at 828.963 kb on - strand, within Pf1N1B4_725 at 829.120 kb on + strand at 829.120 kb on + strand at 829.121 kb on - strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.123 kb on + strand at 829.124 kb on - strand at 829.124 kb on - strand at 829.124 kb on - strand at 829.124 kb on - strand at 829.124 kb on - strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.126 kb on + strand at 829.127 kb on - strand at 829.127 kb on - strand at 829.127 kb on - strand at 829.127 kb on - strand at 829.127 kb on - strand at 829.160 kb on + strand at 829.160 kb on + strand at 829.161 kb on - strand at 829.161 kb on - strand at 829.161 kb on - strand at 829.192 kb on + strand at 829.193 kb on - strand at 829.193 kb on - strand at 829.202 kb on + strand at 829.202 kb on + strand at 829.203 kb on - strand at 829.203 kb on - strand at 829.203 kb on - strand at 829.247 kb on + strand at 829.330 kb on - strand at 829.330 kb on - strand at 831.515 kb on - strand at 831.515 kb on - strand at 831.515 kb on - strand at 831.519 kb on - strand at 831.519 kb on - strand at 831.519 kb on - strand at 831.519 kb on - strand at 831.527 kb on - strand at 831.527 kb on - strand at 831.527 kb on - strand at 831.535 kb on - strand at 831.535 kb on - strand at 831.535 kb on - strand at 831.535 kb on - strand at 831.621 kb on + strand at 831.621 kb on + strand at 831.621 kb on + strand at 831.621 kb on + strand at 831.621 kb on + strand at 831.621 kb on + strand at 831.621 kb on + strand at 831.621 kb on + strand at 831.621 kb on + strand at 831.622 kb on - strand at 831.622 kb on - strand at 831.622 kb on - strand at 831.622 kb on - strand at 831.622 kb on - strand at 831.622 kb on - strand at 831.622 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A remove 828,497 + -0.0 828,583 + Pf1N1B4_725 0.18 +0.7 828,583 + Pf1N1B4_725 0.18 +0.1 828,584 - +1.1 828,622 + Pf1N1B4_725 0.23 -0.0 828,622 + Pf1N1B4_725 0.23 +0.2 828,623 - Pf1N1B4_725 0.24 -1.3 828,623 - Pf1N1B4_725 0.24 +0.9 828,859 + Pf1N1B4_725 0.55 -0.4 828,860 - Pf1N1B4_725 0.55 +0.2 828,860 - Pf1N1B4_725 0.55 +0.6 828,963 - Pf1N1B4_725 0.69 -0.4 829,120 + +1.6 829,120 + -0.4 829,121 - -0.0 829,123 + +0.8 829,123 + -2.4 829,123 + -1.0 829,123 + -1.4 829,123 + +1.1 829,123 + +0.5 829,123 + +0.4 829,123 + -0.8 829,124 - -0.0 829,124 - +0.1 829,124 - -0.8 829,124 - -0.6 829,124 - -0.0 829,126 + -0.0 829,126 + -1.7 829,126 + +1.6 829,126 + +1.1 829,126 + -0.4 829,126 + -0.0 829,126 + -0.4 829,126 + -0.6 829,127 - -0.1 829,127 - +0.6 829,127 - +0.8 829,127 - -0.4 829,127 - +0.6 829,160 + -0.3 829,160 + +0.6 829,161 - -0.9 829,161 - -1.0 829,161 - +0.3 829,192 + +0.2 829,193 - -2.1 829,193 - -1.8 829,202 + +1.6 829,202 + -0.3 829,203 - -1.1 829,203 - +1.6 829,203 - -0.6 829,247 + +2.6 829,330 - +0.3 829,330 - +0.2 831,515 - +0.1 831,515 - -0.8 831,515 - -0.3 831,519 - -0.3 831,519 - -0.4 831,519 - -1.6 831,519 - +0.2 831,527 - -1.4 831,527 - -0.5 831,527 - -1.4 831,535 - -1.5 831,535 - -1.8 831,535 - -1.9 831,535 - +0.1 831,621 + +0.1 831,621 + +0.8 831,621 + +1.6 831,621 + -0.8 831,621 + -1.0 831,621 + +0.2 831,621 + +1.0 831,621 + -0.0 831,621 + -0.2 831,622 - +0.7 831,622 - +0.6 831,622 - -1.5 831,622 - +0.3 831,622 - -0.6 831,622 - +1.9 831,622 - -0.3
Or see this region's nucleotide sequence