Experiment: Nitrate reduction, replicate A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5749 and Pf1N1B4_5750 are separated by 240 nucleotides Pf1N1B4_5750 and Pf1N1B4_5751 are separated by 78 nucleotides
Pf1N1B4_5749 - Molybdenum cofactor biosynthesis protein MoaB, at 189,990 to 190,544
_5749
Pf1N1B4_5750 - Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5), at 190,785 to 191,432
_5750
Pf1N1B4_5751 - Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR, at 191,511 to 193,040
_5751
Position (kb) 190
191
192 Strain fitness (log2 ratio) -2
-1
0
1 at 190.158 kb on - strand, within Pf1N1B4_5749 at 190.379 kb on - strand, within Pf1N1B4_5749 at 190.415 kb on + strand, within Pf1N1B4_5749 at 190.415 kb on + strand, within Pf1N1B4_5749 at 190.415 kb on + strand, within Pf1N1B4_5749 at 190.416 kb on - strand, within Pf1N1B4_5749 at 190.416 kb on - strand, within Pf1N1B4_5749 at 190.416 kb on - strand, within Pf1N1B4_5749 at 190.624 kb on - strand at 190.640 kb on - strand at 190.773 kb on + strand at 190.813 kb on - strand at 190.813 kb on - strand at 191.057 kb on - strand, within Pf1N1B4_5750 at 191.188 kb on + strand, within Pf1N1B4_5750 at 191.189 kb on - strand, within Pf1N1B4_5750 at 191.399 kb on - strand at 191.681 kb on + strand, within Pf1N1B4_5751 at 191.852 kb on + strand, within Pf1N1B4_5751 at 191.854 kb on + strand at 191.854 kb on + strand, within Pf1N1B4_5751 at 191.855 kb on - strand, within Pf1N1B4_5751 at 192.014 kb on - strand, within Pf1N1B4_5751 at 192.320 kb on + strand, within Pf1N1B4_5751 at 192.321 kb on - strand at 192.327 kb on + strand, within Pf1N1B4_5751
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A remove 190,158 - Pf1N1B4_5749 0.30 -1.0 190,379 - Pf1N1B4_5749 0.70 +0.2 190,415 + Pf1N1B4_5749 0.77 -0.8 190,415 + Pf1N1B4_5749 0.77 +0.4 190,415 + Pf1N1B4_5749 0.77 -0.6 190,416 - Pf1N1B4_5749 0.77 +0.4 190,416 - Pf1N1B4_5749 0.77 -1.3 190,416 - Pf1N1B4_5749 0.77 -0.3 190,624 - +0.2 190,640 - -0.0 190,773 + +1.0 190,813 - +1.6 190,813 - -0.7 191,057 - Pf1N1B4_5750 0.42 -1.6 191,188 + Pf1N1B4_5750 0.62 -0.7 191,189 - Pf1N1B4_5750 0.62 +0.3 191,399 - +0.2 191,681 + Pf1N1B4_5751 0.11 -0.4 191,852 + Pf1N1B4_5751 0.22 -0.2 191,854 + -0.2 191,854 + Pf1N1B4_5751 0.22 -2.3 191,855 - Pf1N1B4_5751 0.22 -1.3 192,014 - Pf1N1B4_5751 0.33 -1.7 192,320 + Pf1N1B4_5751 0.53 -0.6 192,321 - -1.2 192,327 + Pf1N1B4_5751 0.53 -1.2
Or see this region's nucleotide sequence