Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4444

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
4,902,289	+				-1.4
4,902,289	+		Pf1N1B4_4442	0.37	-1.9
4,902,478	+		Pf1N1B4_4442	0.58	-0.4
4,902,574	+		Pf1N1B4_4442	0.69	+1.1
4,902,775	+				+0.0
4,902,775	+				-1.9
4,902,776	-				-0.9
4,902,776	-				+0.2
4,902,776	-				+0.1
4,903,184	+				-2.5
4,903,184	+				-0.9
4,903,184	+				-0.4
4,903,184	+				+0.5
4,903,185	-				+0.4
4,903,190	+				-0.9
4,903,190	+				+0.5
4,903,191	-				+0.2
4,903,256	-				-0.8
4,903,269	-				-1.0
4,903,275	-				-0.7
4,903,275	-				-0.5
4,903,275	-				-0.1
4,903,275	-				-0.7
4,903,391	+		Pf1N1B4_4444	0.35	+0.1
4,903,392	-		Pf1N1B4_4444	0.35	-1.2
4,903,522	-		Pf1N1B4_4444	0.72	+1.8
4,903,602	+				+1.0
4,903,603	-				-0.6
4,903,647	+				-1.0
4,903,648	-				-0.4
4,903,665	+				+1.6
4,903,742	-				+1.3
4,903,742	-				+0.8
4,903,929	+				+0.3
4,903,984	-				+0.1
4,904,045	+				+0.5
4,904,066	-				+0.3
4,904,069	+				+0.4
4,904,069	+				-1.1
4,904,070	-				-0.0
4,904,366	+		Pf1N1B4_4445	0.22	-0.2
4,904,366	+		Pf1N1B4_4445	0.22	-0.5
4,904,366	+		Pf1N1B4_4445	0.22	-1.2
4,904,366	+		Pf1N1B4_4445	0.22	-0.9
4,904,367	-		Pf1N1B4_4445	0.22	+0.6