Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4216

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
4,670,751	+		Pf1N1B4_4215	0.57	-0.5
4,670,751	+		Pf1N1B4_4215	0.57	-0.6
4,670,751	+		Pf1N1B4_4215	0.57	+1.6
4,670,752	-		Pf1N1B4_4215	0.57	-0.1
4,670,752	-		Pf1N1B4_4215	0.57	-0.3
4,670,752	-				-0.4
4,670,794	+		Pf1N1B4_4215	0.60	+1.6
4,670,820	+		Pf1N1B4_4215	0.61	-0.7
4,670,886	+		Pf1N1B4_4215	0.65	+0.4
4,670,888	+		Pf1N1B4_4215	0.66	-0.6
4,670,888	+		Pf1N1B4_4215	0.66	-1.6
4,670,888	+		Pf1N1B4_4215	0.66	+0.0
4,670,888	+		Pf1N1B4_4215	0.66	-1.5
4,670,889	-		Pf1N1B4_4215	0.66	+0.7
4,670,889	-		Pf1N1B4_4215	0.66	+1.0
4,670,889	-		Pf1N1B4_4215	0.66	+0.5
4,670,979	-		Pf1N1B4_4215	0.71	-2.1
4,671,337	+				+1.1
4,671,337	+				+0.0
4,671,338	-				-0.5
4,671,413	+				+1.3
4,671,413	+				-0.5
4,671,413	+				+0.5
4,671,414	-				-0.7
4,671,414	-				-0.4
4,671,804	+		Pf1N1B4_4216	0.15	-0.4
4,671,804	+				-1.0
4,672,067	-		Pf1N1B4_4216	0.50	+0.7
4,672,469	+				-1.5
4,672,469	+				-0.9
4,672,470	-				+0.8
4,672,470	-				-0.2
4,672,644	-		Pf1N1B4_4217	0.37	-0.6
4,672,697	+		Pf1N1B4_4217	0.50	-0.8
4,672,697	+		Pf1N1B4_4217	0.50	-0.3
4,672,697	+		Pf1N1B4_4217	0.50	-1.0
4,672,698	-		Pf1N1B4_4217	0.50	-2.1
4,672,698	-		Pf1N1B4_4217	0.50	-1.1
4,672,698	-		Pf1N1B4_4217	0.50	+0.9
4,672,698	-		Pf1N1B4_4217	0.50	+0.7
4,672,949	+				-0.6
4,672,950	-				-1.9
4,672,950	-				+0.2
4,672,950	-				+2.7
4,673,185	+		Pf1N1B4_4218	0.17	+0.9
4,673,185	+		Pf1N1B4_4218	0.17	+0.2
4,673,185	+				-1.0
4,673,185	+		Pf1N1B4_4218	0.17	-0.4
4,673,185	+		Pf1N1B4_4218	0.17	+0.6
4,673,186	-		Pf1N1B4_4218	0.17	-1.4
4,673,230	+		Pf1N1B4_4218	0.21	+0.0
4,673,231	-		Pf1N1B4_4218	0.21	-3.1