Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3780

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
4,188,476	+		Pf1N1B4_3779	0.45	+0.5
4,188,648	+		Pf1N1B4_3779	0.63	-0.0
4,188,648	+		Pf1N1B4_3779	0.63	+0.9
4,188,667	+		Pf1N1B4_3779	0.65	+1.3
4,188,668	-		Pf1N1B4_3779	0.65	+1.1
4,188,948	+				+1.1
4,188,973	+				+0.5
4,188,974	-				-0.5
4,188,974	-				+1.2
4,189,061	+				-0.5
4,189,061	+				-2.2
4,189,061	+				-0.4
4,189,079	+				+2.6
4,189,097	-				-1.1
4,189,097	-				+1.1
4,189,097	-				+0.9
4,189,098	+				+0.2
4,189,120	+				+0.1
4,189,120	+				+1.1
4,190,257	+				+0.6
4,190,257	+				-0.9
4,190,356	+				-0.3
4,190,356	+				-0.7
4,190,357	-				-0.0
4,190,357	-				+0.2
4,190,365	+				-0.5
4,190,365	+				-0.2
4,190,365	+				-1.7
4,190,408	-				+1.9
4,190,408	-				+0.5
4,190,408	-				-0.8
4,190,512	+		Pf1N1B4_3781	0.17	-1.8
4,190,512	+		Pf1N1B4_3781	0.17	+0.4
4,190,556	+		Pf1N1B4_3781	0.21	-0.2
4,190,557	-		Pf1N1B4_3781	0.21	-0.7
4,190,557	-		Pf1N1B4_3781	0.21	-0.4
4,190,557	-		Pf1N1B4_3781	0.21	-0.7
4,190,781	+		Pf1N1B4_3781	0.40	-0.9
4,190,782	-		Pf1N1B4_3781	0.40	+0.9
4,190,794	+		Pf1N1B4_3781	0.41	+0.3
4,190,794	+		Pf1N1B4_3781	0.41	+0.9
4,190,795	-		Pf1N1B4_3781	0.41	+1.3
4,190,935	+		Pf1N1B4_3781	0.54	+3.0
4,190,935	+		Pf1N1B4_3781	0.54	-0.5
4,190,936	-				-0.1
4,190,936	-		Pf1N1B4_3781	0.54	-2.2
4,190,936	-		Pf1N1B4_3781	0.54	-0.6
4,190,974	+		Pf1N1B4_3781	0.57	-1.8
4,190,974	+		Pf1N1B4_3781	0.57	-0.4
4,190,974	+				+2.0
4,190,974	+				+1.6
4,190,975	-		Pf1N1B4_3781	0.57	+0.6
4,190,975	-		Pf1N1B4_3781	0.57	-0.2
4,190,977	+		Pf1N1B4_3781	0.57	-0.7
4,190,977	+		Pf1N1B4_3781	0.57	+0.1
4,190,977	+		Pf1N1B4_3781	0.57	+2.1
4,190,977	+				-1.5
4,190,977	+		Pf1N1B4_3781	0.57	+0.6
4,190,978	-		Pf1N1B4_3781	0.57	+0.5
4,190,978	-		Pf1N1B4_3781	0.57	-0.9
4,191,033	+				+0.3
4,191,065	+		Pf1N1B4_3781	0.65	+0.9
4,191,066	-		Pf1N1B4_3781	0.65	+0.6
4,191,066	-		Pf1N1B4_3781	0.65	-1.4
4,191,066	-		Pf1N1B4_3781	0.65	-0.0
4,191,066	-		Pf1N1B4_3781	0.65	+1.3
4,191,066	-		Pf1N1B4_3781	0.65	+0.8
4,191,068	+		Pf1N1B4_3781	0.65	+1.2