Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3698

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
4,105,399	+		Pf1N1B4_3696	0.64	+0.2
4,105,399	+		Pf1N1B4_3696	0.64	-0.2
4,105,399	+		Pf1N1B4_3696	0.64	+0.2
4,105,567	+		Pf1N1B4_3696	0.88	-2.0
4,105,567	+		Pf1N1B4_3696	0.88	+0.3
4,105,567	+		Pf1N1B4_3696	0.88	-0.7
4,105,567	+		Pf1N1B4_3696	0.88	+0.2
4,105,568	-		Pf1N1B4_3696	0.88	+0.8
4,105,568	-		Pf1N1B4_3696	0.88	+0.6
4,105,568	-		Pf1N1B4_3696	0.88	-0.0
4,105,568	-		Pf1N1B4_3696	0.88	+0.4
4,105,652	+				-0.5
4,105,652	+				-0.5
4,105,653	-				+0.0
4,105,653	-				-0.6
4,105,653	-				-1.7
4,105,662	+				-0.8
4,105,662	+				+0.8
4,105,663	-				+0.0
4,105,663	-				-1.6
4,105,663	-				-1.0
4,105,694	+				-1.2
4,105,694	+				-2.9
4,105,694	+				-3.3
4,105,695	-				-0.1
4,105,709	+				-2.4
4,105,709	+				-1.7
4,105,709	+				-1.4
4,105,839	-		Pf1N1B4_3697	0.27	-1.2
4,105,839	-		Pf1N1B4_3697	0.27	-2.1
4,105,839	-		Pf1N1B4_3697	0.27	-0.7
4,105,841	+		Pf1N1B4_3697	0.28	-1.7
4,105,841	+		Pf1N1B4_3697	0.28	-1.7
4,105,841	+		Pf1N1B4_3697	0.28	-2.2
4,105,841	+		Pf1N1B4_3697	0.28	-2.3
4,105,842	-		Pf1N1B4_3697	0.28	-1.2
4,105,842	-		Pf1N1B4_3697	0.28	-2.8
4,105,850	+		Pf1N1B4_3697	0.29	-1.6
4,105,851	-		Pf1N1B4_3697	0.29	-1.2
4,105,947	-		Pf1N1B4_3697	0.44	-0.8
4,105,956	+		Pf1N1B4_3697	0.45	-2.3
4,105,956	+		Pf1N1B4_3697	0.45	-2.4
4,106,049	-		Pf1N1B4_3697	0.60	-2.7
4,106,049	-		Pf1N1B4_3697	0.60	-1.6
4,106,264	-				-2.4
4,106,925	-				-1.4
4,107,604	+				+2.0
4,107,604	+				+1.1
4,107,604	+				-3.5
4,107,604	+				-0.4
4,107,604	+				-0.7
4,107,605	-				+1.6
4,107,605	-				+2.3
4,107,605	-				+1.6
4,107,606	+				+0.9
4,107,606	+				-0.5
4,107,607	-				-1.2
4,107,634	+				-2.1