Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3568

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
3,970,825	-		Pf1N1B4_3567	0.58	-1.8
3,970,933	+		Pf1N1B4_3567	0.65	-1.4
3,970,933	+		Pf1N1B4_3567	0.65	-1.5
3,970,933	+		Pf1N1B4_3567	0.65	+0.1
3,970,933	+		Pf1N1B4_3567	0.65	+0.5
3,970,934	-		Pf1N1B4_3567	0.65	+1.3
3,970,934	-		Pf1N1B4_3567	0.65	+0.9
3,970,934	-		Pf1N1B4_3567	0.65	+0.5
3,970,934	-		Pf1N1B4_3567	0.65	-1.3
3,970,934	-				-0.4
3,971,014	+		Pf1N1B4_3567	0.70	-0.1
3,971,014	+		Pf1N1B4_3567	0.70	+0.3
3,971,014	+		Pf1N1B4_3567	0.70	+0.7
3,971,014	+		Pf1N1B4_3567	0.70	+0.6
3,971,015	-		Pf1N1B4_3567	0.70	-0.2
3,971,015	-		Pf1N1B4_3567	0.70	-0.0
3,971,173	+		Pf1N1B4_3567	0.80	-0.5
3,971,210	+		Pf1N1B4_3567	0.83	+0.6
3,971,210	+		Pf1N1B4_3567	0.83	-0.1
3,971,210	+		Pf1N1B4_3567	0.83	+0.1
3,971,210	+		Pf1N1B4_3567	0.83	-0.0
3,971,210	+		Pf1N1B4_3567	0.83	+0.2
3,971,211	-		Pf1N1B4_3567	0.83	+0.2
3,971,211	-		Pf1N1B4_3567	0.83	+0.7
3,971,371	+				-0.0
3,971,371	+				+0.7
3,971,371	+				-0.3
3,971,372	-				+0.6
3,971,372	-				-0.2
3,971,372	-				+0.6
3,971,424	+				-1.4
3,971,452	+				-0.0
3,971,452	+				+0.6
3,971,452	+				+0.1
3,971,452	+				+0.5
3,971,452	+				-0.1
3,971,452	+				+0.5
3,971,453	-				+1.2
3,971,453	-				+2.9
3,971,453	-				-0.8
3,971,453	-				-0.0
3,971,464	-				+2.1
3,971,750	-				-1.6
3,971,750	-				+0.6
3,971,801	+				+0.7
3,971,801	+				+0.8
3,971,801	+				+3.1
3,971,801	+				+0.8
3,971,801	+				-0.2
3,971,802	-				+1.1
3,971,802	-				+1.0
3,971,808	-				-0.0
3,971,808	-				-0.8
3,971,808	-				-2.3
3,971,808	-				-0.6
3,971,808	-				-0.4
3,971,882	-		Pf1N1B4_3568	0.12	+1.0
3,972,086	+		Pf1N1B4_3568	0.40	-1.6
3,972,086	+		Pf1N1B4_3568	0.40	-0.0
3,972,530	+				-0.8
3,972,531	-				+1.0
3,972,531	-				+0.4
3,972,534	+				-1.8
3,972,534	+				-0.3
3,972,534	+				+0.2
3,972,535	-				-0.2
3,972,714	-		Pf1N1B4_3569	0.17	-2.3
3,972,714	-		Pf1N1B4_3569	0.17	-0.8
3,972,917	+		Pf1N1B4_3569	0.43	-0.3
3,972,917	+		Pf1N1B4_3569	0.43	+1.0
3,973,295	+				-0.8
3,973,296	-				+0.8
3,973,371	+				+0.3
3,973,371	+				-0.6
3,973,429	+				-0.0
3,973,429	+				+1.3
3,973,429	+				-1.8
3,973,429	+				-0.4
3,973,430	-				+1.6
3,973,430	-				+0.2
3,973,503	+				+0.6
3,973,503	+		Pf1N1B4_3570	0.12	-0.2
3,973,504	-		Pf1N1B4_3570	0.13	+0.6
3,973,506	+		Pf1N1B4_3570	0.13	+0.8
3,973,506	+		Pf1N1B4_3570	0.13	-0.9
3,973,507	-		Pf1N1B4_3570	0.13	+1.9
3,973,507	-		Pf1N1B4_3570	0.13	-0.4
3,973,507	-		Pf1N1B4_3570	0.13	-0.1
3,973,507	-		Pf1N1B4_3570	0.13	-1.8
3,973,507	-		Pf1N1B4_3570	0.13	+1.9
3,973,507	-		Pf1N1B4_3570	0.13	-0.8
3,973,507	-		Pf1N1B4_3570	0.13	-2.2