Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3516

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
3,922,463	+				+0.8
3,922,552	+				+1.0
3,922,583	+				-0.2
3,922,583	+				-1.2
3,922,584	-		Pf1N1B4_3515	0.10	-2.0
3,922,584	-		Pf1N1B4_3515	0.10	-1.8
3,922,683	+		Pf1N1B4_3515	0.21	+0.5
3,922,683	+		Pf1N1B4_3515	0.21	+0.4
3,922,683	+		Pf1N1B4_3515	0.21	-0.8
3,922,683	+		Pf1N1B4_3515	0.21	+1.1
3,922,683	+		Pf1N1B4_3515	0.21	+0.4
3,922,684	-		Pf1N1B4_3515	0.21	+0.2
3,922,684	-		Pf1N1B4_3515	0.21	-1.8
3,922,684	-		Pf1N1B4_3515	0.21	-1.0
3,922,687	+		Pf1N1B4_3515	0.21	+0.8
3,922,752	+		Pf1N1B4_3515	0.28	+1.1
3,922,752	+		Pf1N1B4_3515	0.28	+0.7
3,922,752	+		Pf1N1B4_3515	0.28	+0.4
3,922,752	+		Pf1N1B4_3515	0.28	-0.1
3,922,752	+		Pf1N1B4_3515	0.28	-0.0
3,922,791	+		Pf1N1B4_3515	0.32	+0.7
3,922,792	-		Pf1N1B4_3515	0.32	-0.8
3,923,165	+		Pf1N1B4_3515	0.72	+1.3
3,923,425	+				-1.2
3,923,425	+				+0.6
3,923,425	+				+0.3
3,923,425	+				+0.8
3,923,425	+				+0.1
3,923,425	+				+0.1
3,923,425	+				+2.1
3,923,425	+				+0.8
3,923,426	-				-1.8
3,923,426	-				+0.9
3,923,426	-				-0.1
3,923,426	-				-1.1
3,923,449	+				+0.1
3,923,449	+				+0.9
3,923,449	+				+0.5
3,923,449	+				+3.1
3,923,450	-				+0.3
3,923,470	+				-2.6
3,923,470	+				+2.8
3,923,470	+				+0.7
3,923,470	+				-1.4
3,923,470	+				+0.9
3,923,471	-				+0.7
3,923,620	+				+0.4
3,923,620	+				+2.5
3,923,620	+				+2.1
3,923,620	+				+0.8
3,923,620	+				-0.0
3,923,621	-				+0.8
3,923,621	-				-0.0
3,923,623	+				+1.0
3,923,623	+				+0.8
3,923,623	+				+0.1
3,923,623	+				+0.9
3,923,624	-				+1.1
3,923,661	+		Pf1N1B4_3516	0.11	+0.2
3,923,734	+		Pf1N1B4_3516	0.15	+0.6
3,923,734	+		Pf1N1B4_3516	0.15	+1.4
3,923,734	+		Pf1N1B4_3516	0.15	+0.6
3,923,734	+		Pf1N1B4_3516	0.15	+1.3
3,923,734	+		Pf1N1B4_3516	0.15	+0.9
3,923,734	+		Pf1N1B4_3516	0.15	+2.7
3,923,734	+		Pf1N1B4_3516	0.15	+0.7
3,923,734	+		Pf1N1B4_3516	0.15	-0.1
3,923,735	-		Pf1N1B4_3516	0.15	-0.0
3,923,740	+		Pf1N1B4_3516	0.15	+0.6
3,923,740	+		Pf1N1B4_3516	0.15	+0.1
3,923,740	+		Pf1N1B4_3516	0.15	+0.9
3,923,740	+		Pf1N1B4_3516	0.15	+0.8
3,923,740	+		Pf1N1B4_3516	0.15	+1.6
3,923,740	+		Pf1N1B4_3516	0.15	-1.1
3,923,740	+		Pf1N1B4_3516	0.15	-0.8
3,923,740	+				+2.0
3,923,740	+		Pf1N1B4_3516	0.15	-0.2
3,923,740	+		Pf1N1B4_3516	0.15	+0.3
3,923,740	+		Pf1N1B4_3516	0.15	+0.4
3,923,740	+		Pf1N1B4_3516	0.15	+1.0
3,923,740	+		Pf1N1B4_3516	0.15	+0.2
3,923,740	+		Pf1N1B4_3516	0.15	+0.6
3,923,741	-		Pf1N1B4_3516	0.15	+0.2
3,923,741	-		Pf1N1B4_3516	0.15	+0.6
3,923,741	-		Pf1N1B4_3516	0.15	+0.4
3,923,833	+		Pf1N1B4_3516	0.19	+0.1
3,923,833	+		Pf1N1B4_3516	0.19	+0.3
3,923,833	+		Pf1N1B4_3516	0.19	+1.1
3,923,833	+		Pf1N1B4_3516	0.19	+1.7
3,923,834	-		Pf1N1B4_3516	0.19	+0.6
3,923,834	-		Pf1N1B4_3516	0.19	+0.6
3,923,881	+		Pf1N1B4_3516	0.22	+0.8
3,923,932	+		Pf1N1B4_3516	0.24	+2.7
3,923,932	+		Pf1N1B4_3516	0.24	+0.5
3,923,998	+		Pf1N1B4_3516	0.27	+1.8
3,923,998	+		Pf1N1B4_3516	0.27	-0.0
3,924,049	+		Pf1N1B4_3516	0.29	+1.0
3,924,103	+		Pf1N1B4_3516	0.32	+1.2
3,924,104	-		Pf1N1B4_3516	0.32	+0.4
3,924,139	+		Pf1N1B4_3516	0.34	+0.3
3,924,139	+		Pf1N1B4_3516	0.34	+1.4
3,924,193	+		Pf1N1B4_3516	0.36	-0.0
3,924,193	+		Pf1N1B4_3516	0.36	+0.5
3,924,193	+		Pf1N1B4_3516	0.36	+1.6
3,924,193	+		Pf1N1B4_3516	0.36	+1.0
3,924,194	-		Pf1N1B4_3516	0.36	+1.1
3,924,194	-				+0.6
3,924,289	+		Pf1N1B4_3516	0.41	+0.8
3,924,289	+		Pf1N1B4_3516	0.41	+1.2
3,924,289	+		Pf1N1B4_3516	0.41	+0.8
3,924,289	+		Pf1N1B4_3516	0.41	+0.9
3,924,289	+		Pf1N1B4_3516	0.41	-0.0
3,924,290	-		Pf1N1B4_3516	0.41	+1.2
3,924,290	-		Pf1N1B4_3516	0.41	-1.0
3,924,290	-		Pf1N1B4_3516	0.41	-0.5
3,924,290	-		Pf1N1B4_3516	0.41	-0.1
3,924,319	+		Pf1N1B4_3516	0.42	-0.8
3,924,319	+		Pf1N1B4_3516	0.42	+0.8
3,924,385	+		Pf1N1B4_3516	0.45	-0.2
3,924,550	+		Pf1N1B4_3516	0.53	+0.3
3,924,550	+		Pf1N1B4_3516	0.53	-0.2
3,924,551	-		Pf1N1B4_3516	0.53	+0.6
3,924,659	+		Pf1N1B4_3516	0.58	-0.4
3,924,659	+		Pf1N1B4_3516	0.58	+1.3
3,924,659	+		Pf1N1B4_3516	0.58	+1.6
3,924,660	-		Pf1N1B4_3516	0.58	+1.3
3,924,661	+		Pf1N1B4_3516	0.58	-0.0
3,924,662	-		Pf1N1B4_3516	0.58	-2.5
3,924,662	-		Pf1N1B4_3516	0.58	+0.2
3,924,712	+		Pf1N1B4_3516	0.61	+2.7
3,924,712	+		Pf1N1B4_3516	0.61	-0.3
3,924,713	-				+1.1
3,924,775	+		Pf1N1B4_3516	0.64	+1.1
3,924,779	+		Pf1N1B4_3516	0.64	+0.0
3,924,779	+		Pf1N1B4_3516	0.64	-0.2
3,924,779	+		Pf1N1B4_3516	0.64	-0.0
3,924,779	+		Pf1N1B4_3516	0.64	+1.0
3,924,779	+		Pf1N1B4_3516	0.64	+0.1
3,924,779	+		Pf1N1B4_3516	0.64	+1.4
3,924,779	+		Pf1N1B4_3516	0.64	+0.8
3,924,779	+		Pf1N1B4_3516	0.64	+0.0
3,924,781	+		Pf1N1B4_3516	0.64	+0.4
3,924,781	+		Pf1N1B4_3516	0.64	+0.1
3,924,781	+		Pf1N1B4_3516	0.64	+0.6
3,924,995	-		Pf1N1B4_3516	0.74	-0.1
3,925,007	+		Pf1N1B4_3516	0.75	+1.7
3,925,169	+		Pf1N1B4_3516	0.82	-0.0
3,925,205	-		Pf1N1B4_3516	0.84	-0.2
3,925,267	+		Pf1N1B4_3516	0.87	+0.3
3,925,267	+		Pf1N1B4_3516	0.87	+0.7
3,925,267	+		Pf1N1B4_3516	0.87	+0.2
3,925,267	+		Pf1N1B4_3516	0.87	-0.5
3,925,267	+		Pf1N1B4_3516	0.87	-0.2
3,925,267	+		Pf1N1B4_3516	0.87	+0.2
3,925,268	-				+0.2
3,925,268	-		Pf1N1B4_3516	0.87	+0.6
3,925,268	-		Pf1N1B4_3516	0.87	+1.0
3,925,557	+				+0.9
3,925,557	+				+1.0
3,925,558	-				-0.4
3,925,558	-				-1.2
3,925,651	+				-0.0
3,925,663	+		Pf1N1B4_3517	0.25	+0.4
3,925,701	+		Pf1N1B4_3517	0.42	+0.3
3,925,701	+		Pf1N1B4_3517	0.42	-0.2
3,925,743	+		Pf1N1B4_3517	0.61	-0.0