Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3438

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
3,829,280	+		Pf1N1B4_3436	0.63	+2.4
3,829,281	-		Pf1N1B4_3436	0.63	-0.4
3,829,281	-		Pf1N1B4_3436	0.63	+0.2
3,829,350	+				-0.8
3,829,351	-				-1.3
3,829,532	-		Pf1N1B4_3437	0.24	-0.4
3,829,558	-		Pf1N1B4_3437	0.27	-0.0
3,829,945	+		Pf1N1B4_3437	0.70	+0.9
3,829,980	+		Pf1N1B4_3437	0.74	+0.1
3,829,980	+		Pf1N1B4_3437	0.74	+1.6
3,829,981	-		Pf1N1B4_3437	0.74	+1.6
3,829,981	-		Pf1N1B4_3437	0.74	+0.4
3,829,981	-		Pf1N1B4_3437	0.74	+2.6
3,829,981	-		Pf1N1B4_3437	0.74	-0.3
3,829,981	-		Pf1N1B4_3437	0.74	-1.2
3,830,005	-		Pf1N1B4_3437	0.76	-0.1
3,830,007	+		Pf1N1B4_3437	0.76	+0.6
3,830,007	+		Pf1N1B4_3437	0.76	+0.8
3,830,007	+		Pf1N1B4_3437	0.76	-0.3
3,830,008	-		Pf1N1B4_3437	0.77	+0.0
3,830,008	-		Pf1N1B4_3437	0.77	-1.3
3,830,008	-		Pf1N1B4_3437	0.77	+0.9
3,830,008	-		Pf1N1B4_3437	0.77	-0.2
3,830,008	-		Pf1N1B4_3437	0.77	+1.0
3,830,008	-		Pf1N1B4_3437	0.77	+1.0
3,830,008	-		Pf1N1B4_3437	0.77	+0.2
3,830,008	-		Pf1N1B4_3437	0.77	+2.6
3,830,008	-		Pf1N1B4_3437	0.77	+0.6
3,830,351	+				+1.7
3,830,543	-				-0.3
3,830,552	-				-0.9
3,830,619	-				+0.4
3,830,834	+		Pf1N1B4_3438	0.12	+0.8
3,830,834	+		Pf1N1B4_3438	0.12	+0.4
3,830,834	+		Pf1N1B4_3438	0.12	-1.6
3,830,834	+		Pf1N1B4_3438	0.12	-0.2
3,830,835	-				+0.7
3,830,835	-		Pf1N1B4_3438	0.12	+0.8
3,830,912	+		Pf1N1B4_3438	0.13	-1.6
3,830,912	+		Pf1N1B4_3438	0.13	+1.3
3,830,912	+		Pf1N1B4_3438	0.13	-1.4
3,830,912	+		Pf1N1B4_3438	0.13	+2.3
3,830,912	+		Pf1N1B4_3438	0.13	+0.3
3,830,912	+		Pf1N1B4_3438	0.13	+1.6
3,830,912	+		Pf1N1B4_3438	0.13	-1.4
3,830,913	-		Pf1N1B4_3438	0.13	+0.6
3,830,913	-		Pf1N1B4_3438	0.13	-1.3
3,830,913	-		Pf1N1B4_3438	0.13	-1.4
3,831,217	+		Pf1N1B4_3438	0.19	+0.9
3,831,217	+		Pf1N1B4_3438	0.19	+0.3
3,831,217	+				-0.0
3,831,217	+		Pf1N1B4_3438	0.19	+0.1
3,831,278	+		Pf1N1B4_3438	0.20	+0.6
3,831,278	+		Pf1N1B4_3438	0.20	+1.6
3,831,279	-		Pf1N1B4_3438	0.20	-0.0
3,831,343	+		Pf1N1B4_3438	0.22	-0.5
3,831,343	+		Pf1N1B4_3438	0.22	-0.1
3,831,343	+		Pf1N1B4_3438	0.22	-2.6
3,831,343	+		Pf1N1B4_3438	0.22	+0.3
3,831,343	+				-0.0
3,831,343	+		Pf1N1B4_3438	0.22	+0.6
3,831,343	+		Pf1N1B4_3438	0.22	+0.4
3,831,344	-		Pf1N1B4_3438	0.22	-0.0
3,831,344	-		Pf1N1B4_3438	0.22	-0.8
3,831,479	+		Pf1N1B4_3438	0.24	-1.3
3,831,480	-		Pf1N1B4_3438	0.24	-0.1
3,831,480	-		Pf1N1B4_3438	0.24	+0.9
3,831,534	-		Pf1N1B4_3438	0.25	+1.0
3,831,615	+		Pf1N1B4_3438	0.27	+0.1
3,831,971	+		Pf1N1B4_3438	0.34	-0.0
3,831,971	+		Pf1N1B4_3438	0.34	-1.3
3,831,971	+				-0.0
3,831,971	+		Pf1N1B4_3438	0.34	-0.4
3,831,971	+		Pf1N1B4_3438	0.34	-0.2
3,831,971	+		Pf1N1B4_3438	0.34	-0.1
3,831,971	+		Pf1N1B4_3438	0.34	-0.8
3,831,971	+		Pf1N1B4_3438	0.34	+0.3
3,831,971	+		Pf1N1B4_3438	0.34	-0.2
3,831,971	+		Pf1N1B4_3438	0.34	-0.4
3,831,971	+		Pf1N1B4_3438	0.34	+0.7
3,831,972	-		Pf1N1B4_3438	0.34	+0.3
3,831,972	-		Pf1N1B4_3438	0.34	-0.0
3,831,972	-		Pf1N1B4_3438	0.34	-2.3
3,832,089	-				-1.0
3,832,129	-		Pf1N1B4_3438	0.37	-0.4
3,832,129	-				-2.8
3,832,129	-		Pf1N1B4_3438	0.37	+0.7
3,832,144	+		Pf1N1B4_3438	0.38	-1.0
3,832,145	-		Pf1N1B4_3438	0.38	-0.3
3,832,217	+				+1.6
3,832,217	+		Pf1N1B4_3438	0.39	-1.8
3,832,217	+		Pf1N1B4_3438	0.39	-0.4
3,832,217	+		Pf1N1B4_3438	0.39	+0.2
3,832,217	+		Pf1N1B4_3438	0.39	+1.6
3,832,218	-		Pf1N1B4_3438	0.39	-0.6
3,832,247	-		Pf1N1B4_3438	0.40	-3.1
3,832,376	+				+1.0
3,832,377	-		Pf1N1B4_3438	0.42	-0.4
3,832,377	-		Pf1N1B4_3438	0.42	-0.2
3,832,377	-		Pf1N1B4_3438	0.42	+0.1
3,832,418	+		Pf1N1B4_3438	0.43	-1.2
3,832,419	-		Pf1N1B4_3438	0.43	-0.3
3,832,474	+		Pf1N1B4_3438	0.44	+2.1
3,832,474	+		Pf1N1B4_3438	0.44	+0.6
3,832,474	+		Pf1N1B4_3438	0.44	-0.0
3,832,474	+				-0.0
3,832,474	+		Pf1N1B4_3438	0.44	-0.9
3,832,475	-		Pf1N1B4_3438	0.44	-1.8
3,832,475	-		Pf1N1B4_3438	0.44	-0.9
3,832,475	-				-0.0
3,832,475	-				+0.9
3,832,475	-		Pf1N1B4_3438	0.44	-0.3
3,832,475	-		Pf1N1B4_3438	0.44	+0.1
3,832,475	-		Pf1N1B4_3438	0.44	-0.0
3,832,614	+		Pf1N1B4_3438	0.47	+1.0
3,832,614	+		Pf1N1B4_3438	0.47	+1.2
3,832,614	+		Pf1N1B4_3438	0.47	+0.6
3,832,614	+		Pf1N1B4_3438	0.47	+0.3
3,832,615	-		Pf1N1B4_3438	0.47	-0.8
3,832,631	+		Pf1N1B4_3438	0.47	-0.2
3,832,838	+		Pf1N1B4_3438	0.51	-0.0
3,833,134	+		Pf1N1B4_3438	0.57	-1.0
3,833,135	-		Pf1N1B4_3438	0.57	-0.5
3,833,451	+		Pf1N1B4_3438	0.64	+0.8
3,833,451	+		Pf1N1B4_3438	0.64	-0.4
3,833,466	-		Pf1N1B4_3438	0.64	+0.3
3,833,531	+		Pf1N1B4_3438	0.65	-2.2
3,833,531	+		Pf1N1B4_3438	0.65	-0.3
3,833,531	+		Pf1N1B4_3438	0.65	-1.3
3,833,531	+		Pf1N1B4_3438	0.65	-0.2
3,833,532	-		Pf1N1B4_3438	0.65	-0.4
3,833,532	-		Pf1N1B4_3438	0.65	-0.0
3,833,761	+		Pf1N1B4_3438	0.70	-1.1
3,833,806	-		Pf1N1B4_3438	0.71	+0.0
3,833,883	-		Pf1N1B4_3438	0.72	+2.2
3,833,891	+		Pf1N1B4_3438	0.72	+1.3
3,833,892	-		Pf1N1B4_3438	0.72	-1.3
3,834,077	+		Pf1N1B4_3438	0.76	-0.2
3,834,078	-				+1.6
3,834,278	+		Pf1N1B4_3438	0.80	+1.8
3,834,279	-		Pf1N1B4_3438	0.80	-2.0
3,834,335	+		Pf1N1B4_3438	0.81	-0.4
3,834,335	+		Pf1N1B4_3438	0.81	-2.0
3,834,335	+		Pf1N1B4_3438	0.81	+2.1
3,834,335	+		Pf1N1B4_3438	0.81	-0.3
3,834,335	+		Pf1N1B4_3438	0.81	-0.1
3,834,336	-		Pf1N1B4_3438	0.81	-0.2
3,834,369	+		Pf1N1B4_3438	0.82	+0.2
3,834,369	+		Pf1N1B4_3438	0.82	+1.1
3,834,371	+				+0.8
3,834,371	+		Pf1N1B4_3438	0.82	-0.3
3,834,371	+		Pf1N1B4_3438	0.82	-1.3
3,834,371	+		Pf1N1B4_3438	0.82	+1.0
3,834,372	-		Pf1N1B4_3438	0.82	-0.0
3,834,372	-		Pf1N1B4_3438	0.82	-0.8
3,834,372	-		Pf1N1B4_3438	0.82	-0.4
3,834,372	-		Pf1N1B4_3438	0.82	+0.6
3,834,372	-		Pf1N1B4_3438	0.82	-0.8
3,834,515	-				-0.4
3,834,563	+		Pf1N1B4_3438	0.86	+0.4
3,834,563	+		Pf1N1B4_3438	0.86	-1.6
3,834,563	+		Pf1N1B4_3438	0.86	-0.8
3,834,563	+		Pf1N1B4_3438	0.86	+3.1
3,834,563	+		Pf1N1B4_3438	0.86	+0.8
3,834,563	+		Pf1N1B4_3438	0.86	+0.4
3,834,564	-		Pf1N1B4_3438	0.86	-2.4
3,834,564	-		Pf1N1B4_3438	0.86	-0.8
3,834,680	+		Pf1N1B4_3438	0.88	+0.3
3,834,680	+		Pf1N1B4_3438	0.88	-1.8
3,834,792	+				+0.9
3,834,794	+				-0.4
3,834,794	+				-0.6
3,834,794	+				+0.2
3,834,794	+				+0.3
3,834,794	+				+0.3
3,834,794	+				-1.0
3,834,794	+				+1.6
3,834,794	+				+0.9
3,834,794	+				+0.4
3,834,794	+				+0.1
3,834,794	+				+0.6
3,834,794	+				-0.9
3,834,794	+				-1.9
3,834,794	+				+0.7
3,834,794	+				-0.0
3,834,794	+				+0.3
3,834,794	+				+0.2
3,834,794	+				+0.0
3,834,795	-				-0.8
3,834,795	-				+1.1
3,834,795	-				+0.3
3,834,795	-				-1.6
3,834,795	-				-0.4
3,834,930	+				-0.8
3,834,930	+				-0.0
3,834,930	+				-0.2
3,834,932	+				-1.7
3,834,932	+				-1.6
3,834,948	+				+2.1
3,834,948	+				+0.1
3,834,948	+				-1.1
3,834,948	+				-0.9
3,834,948	+				+1.6
3,835,000	+				+0.3
3,835,000	+				-0.4
3,835,226	+				+0.9
3,835,226	+				-1.1
3,835,226	+				-0.0
3,835,318	+				-0.8
3,835,318	+				-0.4
3,835,350	+				-0.3
3,835,350	+				+1.1
3,835,350	+				+1.7
3,835,350	+				+0.6
3,835,350	+				+0.1
3,835,354	+				-1.8
3,835,354	+				+0.8
3,835,354	+				+0.9
3,835,354	+				-0.6
3,835,354	+				-0.7
3,835,354	+				-0.1
3,835,354	+				+1.1
3,835,354	+				+0.3
3,835,354	+				+1.3
3,835,354	+				+1.0
3,835,354	+				+1.2
3,835,354	+				-1.0
3,835,354	+				+0.9
3,835,354	+				+1.6
3,835,354	+				-2.3
3,835,354	+				+0.6
3,835,354	+				-0.0
3,835,354	+				-0.3
3,835,354	+				+0.6
3,835,354	+				+0.8
3,835,354	+				-0.4
3,835,354	+				+0.4
3,835,354	+				+0.4
3,835,355	-				-0.6
3,835,355	-				+0.7
3,835,355	-				+0.7
3,835,355	-				+2.6
3,835,358	+				+0.3
3,835,385	+				+0.2
3,835,385	+				-1.4
3,835,385	+				-0.3
3,835,385	+				-1.0
3,835,385	+				-0.4
3,835,445	+				+0.8
3,835,445	+				+0.2
3,835,445	+				-0.9
3,835,445	+				-0.6
3,835,490	+				+0.2
3,835,491	-				-1.8
3,835,492	+				-0.0
3,835,492	+				+1.1
3,835,492	+				-0.6
3,835,492	+				+0.8
3,835,492	+				-0.2
3,835,492	+				-1.8
3,835,537	+		Pf1N1B4_3439	0.40	-0.2
3,835,537	+		Pf1N1B4_3439	0.40	+1.6
3,835,866	+		Pf1N1B4_3440	0.22	+0.1
3,835,866	+		Pf1N1B4_3440	0.22	-1.3
3,835,987	+		Pf1N1B4_3440	0.32	-0.0
3,836,110	+		Pf1N1B4_3440	0.42	-0.7
3,836,110	+		Pf1N1B4_3440	0.42	+1.1
3,836,110	+		Pf1N1B4_3440	0.42	-0.6
3,836,110	+		Pf1N1B4_3440	0.42	+1.4
3,836,110	+		Pf1N1B4_3440	0.42	-2.4
3,836,110	+		Pf1N1B4_3440	0.42	-2.1
3,836,110	+		Pf1N1B4_3440	0.42	-0.4
3,836,110	+		Pf1N1B4_3440	0.42	-1.4
3,836,110	+				+1.1
3,836,110	+		Pf1N1B4_3440	0.42	-1.8
3,836,215	+		Pf1N1B4_3440	0.51	+0.2
3,836,215	+		Pf1N1B4_3440	0.51	+0.6
3,836,215	+		Pf1N1B4_3440	0.51	-0.2
3,836,215	+		Pf1N1B4_3440	0.51	-0.0
3,836,215	+		Pf1N1B4_3440	0.51	+1.9
3,836,215	+		Pf1N1B4_3440	0.51	-0.3
3,836,215	+		Pf1N1B4_3440	0.51	-0.4
3,836,215	+		Pf1N1B4_3440	0.51	+1.0