Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3122

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
3,507,541	-		Pf1N1B4_3119	0.55	-0.6
3,507,624	+		Pf1N1B4_3119	0.79	-1.2
3,507,624	+		Pf1N1B4_3119	0.79	+0.3
3,507,625	-				+1.6
3,507,824	+		Pf1N1B4_3120	0.73	+1.0
3,507,824	+		Pf1N1B4_3120	0.73	-1.4
3,507,824	+		Pf1N1B4_3120	0.73	-1.6
3,507,825	-				+0.4
3,507,913	+		Pf1N1B4_3121	0.15	+0.7
3,507,914	-		Pf1N1B4_3121	0.15	+1.2
3,507,914	-		Pf1N1B4_3121	0.15	-0.1
3,507,914	-		Pf1N1B4_3121	0.15	-0.4
3,507,948	+		Pf1N1B4_3121	0.21	-0.2
3,507,949	-		Pf1N1B4_3121	0.21	+1.6
3,507,949	-		Pf1N1B4_3121	0.21	+1.2
3,507,949	-		Pf1N1B4_3121	0.21	-0.4
3,507,949	-		Pf1N1B4_3121	0.21	-1.6
3,507,949	-		Pf1N1B4_3121	0.21	-0.6
3,508,100	-		Pf1N1B4_3121	0.47	-0.7
3,508,100	-		Pf1N1B4_3121	0.47	+0.4
3,508,137	+		Pf1N1B4_3121	0.53	+1.4
3,508,152	+		Pf1N1B4_3121	0.56	-0.6
3,508,153	-		Pf1N1B4_3121	0.56	-0.6
3,508,399	+				-0.7
3,508,399	+				-0.0
3,508,587	-				+0.2
3,508,639	+				-1.2
3,508,639	+				-0.3
3,508,639	+				-1.2
3,508,640	-				+0.9
3,508,640	-				-0.3
3,508,813	+		Pf1N1B4_3123	0.15	+0.7
3,508,813	+		Pf1N1B4_3123	0.15	-0.2
3,508,813	+				+1.1
3,508,813	+		Pf1N1B4_3123	0.15	+1.0
3,508,813	+		Pf1N1B4_3123	0.15	+0.7
3,508,813	+		Pf1N1B4_3123	0.15	-1.1
3,508,814	-		Pf1N1B4_3123	0.15	-0.3
3,508,814	-		Pf1N1B4_3123	0.15	-0.4
3,508,945	+		Pf1N1B4_3123	0.24	-0.9
3,508,945	+				-0.7
3,508,945	+		Pf1N1B4_3123	0.24	+0.3
3,509,374	+		Pf1N1B4_3123	0.53	+1.2
3,509,374	+		Pf1N1B4_3123	0.53	+0.8
3,509,374	+		Pf1N1B4_3123	0.53	+1.3