Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3087

Experiment: Nitrate reduction, replicate A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3085 and Pf1N1B4_3086 are separated by 210 nucleotidesPf1N1B4_3086 and Pf1N1B4_3087 overlap by 4 nucleotidesPf1N1B4_3087 and Pf1N1B4_3088 are separated by 46 nucleotidesPf1N1B4_3088 and Pf1N1B4_3089 overlap by 1 nucleotides Pf1N1B4_3085 - Translation elongation factor Ts, at 3,468,675 to 3,469,538 _3085 Pf1N1B4_3086 - Uridine monophosphate kinase (EC 2.7.4.22), at 3,469,749 to 3,470,492 _3086 Pf1N1B4_3087 - Ribosome recycling factor, at 3,470,489 to 3,471,046 _3087 Pf1N1B4_3088 - Undecaprenyl diphosphate synthase (EC 2.5.1.31), at 3,471,093 to 3,471,815 _3088 Pf1N1B4_3089 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 3,471,815 to 3,472,621 _3089 Position (kb) 3470 3471 3472Strain fitness (log2 ratio) -1 0 1at 3469.641 kb on + strandat 3469.681 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A
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3,469,641 + -0.0
3,469,681 + -1.2

Or see this region's nucleotide sequence