Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2938

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
3,293,890	+		Pf1N1B4_2936	0.83	-1.0
3,293,890	+		Pf1N1B4_2936	0.83	-1.7
3,293,890	+		Pf1N1B4_2936	0.83	-3.5
3,293,890	+				-0.0
3,293,891	-		Pf1N1B4_2936	0.83	-0.6
3,293,891	-		Pf1N1B4_2936	0.83	-2.2
3,293,914	-		Pf1N1B4_2936	0.85	-2.6
3,293,914	-		Pf1N1B4_2936	0.85	-0.0
3,293,914	-		Pf1N1B4_2936	0.85	-2.1
3,293,914	-		Pf1N1B4_2936	0.85	-2.8
3,293,999	+		Pf1N1B4_2936	0.90	-1.2
3,293,999	+		Pf1N1B4_2936	0.90	-2.0
3,294,000	-		Pf1N1B4_2936	0.90	-1.8
3,294,000	-				-0.8
3,294,002	-		Pf1N1B4_2936	0.90	-3.0
3,294,002	-		Pf1N1B4_2936	0.90	-1.6
3,294,002	-		Pf1N1B4_2936	0.90	-2.2
3,294,116	+				-1.6
3,294,117	-				-2.1
3,294,117	-				-0.4
3,294,256	-				+1.2
3,294,297	-				-0.4
3,294,297	-				+0.3
3,294,297	-				-0.6
3,294,651	+		Pf1N1B4_2937	0.67	-0.4
3,294,651	+		Pf1N1B4_2937	0.67	-1.9
3,294,651	+		Pf1N1B4_2937	0.67	-0.4
3,294,652	-		Pf1N1B4_2937	0.67	+1.8
3,294,652	-		Pf1N1B4_2937	0.67	+0.9
3,294,685	-		Pf1N1B4_2937	0.74	+2.6
3,294,685	-		Pf1N1B4_2937	0.74	-0.8
3,294,738	+		Pf1N1B4_2937	0.85	-0.1
3,294,738	+		Pf1N1B4_2937	0.85	-0.0
3,294,738	+		Pf1N1B4_2937	0.85	-0.0
3,294,739	-		Pf1N1B4_2937	0.85	+1.6
3,294,739	-		Pf1N1B4_2937	0.85	-0.4
3,294,739	-		Pf1N1B4_2937	0.85	-0.8
3,294,756	+		Pf1N1B4_2937	0.88	-0.8
3,294,757	-		Pf1N1B4_2937	0.88	+1.0
3,294,770	+				-2.1
3,294,770	+				-0.2
3,294,771	-				+2.2
3,294,771	-				+0.8
3,294,887	+				-1.4
3,294,888	-				+0.6
3,294,888	-				+0.7
3,295,131	+		Pf1N1B4_2938	0.89	-0.8
3,295,131	+		Pf1N1B4_2938	0.89	-0.1
3,295,161	+				+0.2
3,295,216	+				+0.8
3,295,222	+				+1.2
3,295,222	+				-1.1
3,295,222	+				+1.1
3,295,222	+				-0.4
3,295,222	+				+0.6
3,295,222	+				+1.6
3,295,223	-				+0.1
3,295,233	+				-0.7
3,295,234	-				+0.6
3,295,234	-				+0.1
3,295,239	+				-1.4
3,295,240	-				-1.8
3,295,240	-				-0.2
3,295,240	-				-1.6
3,295,240	-				+1.3
3,295,324	+				+0.6
3,295,324	+				-0.3
3,295,325	-				+0.3
3,295,325	-				-0.5
3,295,325	-				-1.7
3,295,343	+				-0.9
3,295,343	+				+0.6
3,295,343	+				+1.1
3,295,710	-		Pf1N1B4_2939	0.25	-0.0
3,295,769	+		Pf1N1B4_2939	0.29	-0.4
3,295,770	-		Pf1N1B4_2939	0.29	-0.4
3,295,892	+		Pf1N1B4_2939	0.37	-1.0
3,295,985	+		Pf1N1B4_2939	0.43	+1.6
3,295,985	+		Pf1N1B4_2939	0.43	+1.6
3,295,985	+		Pf1N1B4_2939	0.43	-0.0
3,295,986	-		Pf1N1B4_2939	0.43	-0.4