Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2870

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
3,216,682	-		Pf1N1B4_2869	0.24	+2.4
3,216,682	-		Pf1N1B4_2869	0.24	+2.3
3,216,684	+		Pf1N1B4_2869	0.25	-0.0
3,216,684	+		Pf1N1B4_2869	0.25	+3.6
3,216,684	+		Pf1N1B4_2869	0.25	-0.8
3,216,684	+		Pf1N1B4_2869	0.25	+0.4
3,216,684	+		Pf1N1B4_2869	0.25	-0.4
3,216,685	-		Pf1N1B4_2869	0.25	-0.4
3,216,720	+		Pf1N1B4_2869	0.29	+1.2
3,216,720	+		Pf1N1B4_2869	0.29	-0.9
3,216,720	+		Pf1N1B4_2869	0.29	+0.6
3,216,842	+		Pf1N1B4_2869	0.43	+0.6
3,216,919	+		Pf1N1B4_2869	0.52	-0.6
3,217,092	+		Pf1N1B4_2869	0.72	-0.8
3,217,133	+		Pf1N1B4_2869	0.76	-1.4
3,217,203	+		Pf1N1B4_2869	0.85	-0.2
3,217,204	-		Pf1N1B4_2869	0.85	+1.0
3,217,253	+				-0.8
3,217,254	-				-0.6
3,217,254	-				+2.2
3,217,263	-				-1.0
3,217,263	-				+1.6
3,217,263	-				+1.1
3,217,264	+				+0.8
3,217,264	+				+0.8
3,217,264	+				-0.8
3,217,289	+				-1.7
3,217,307	-				-0.8
3,217,334	+				+0.1
3,217,334	+				-1.0
3,217,335	-				+0.1
3,217,391	-				-1.1
3,217,391	-				-1.2
3,217,401	-				-1.4
3,217,417	-				+0.4
3,217,417	-				+1.0
3,217,417	-				+1.1
3,217,417	-				-2.5
3,217,561	+				-0.4
3,217,561	+				-0.0
3,217,561	+				-0.0
3,217,562	-				-1.8
3,217,562	-				-0.1
3,217,562	-				+2.0
3,217,562	-				-0.4
3,217,562	-				+1.8
3,217,562	-				+1.0
3,217,562	-				-0.2
3,217,588	+				-0.1
3,217,594	+				+1.2
3,217,594	+				+0.4
3,217,594	+				-2.0
3,217,595	-				-0.8
3,217,595	-				-1.2
3,217,595	-				-1.4
3,217,628	+				+1.3
3,217,629	-				-0.3
3,217,629	-				-0.4
3,217,629	-				-0.8
3,217,629	-				-0.3
3,217,630	-				-1.0
3,217,715	-		Pf1N1B4_2870	0.40	+0.9
3,217,715	-		Pf1N1B4_2870	0.40	-1.4
3,217,715	-		Pf1N1B4_2870	0.40	-1.0
3,217,929	+				+0.9
3,217,940	-				-0.1
3,217,984	-				+1.8
3,217,997	+				-0.8
3,217,998	-				-0.5
3,217,998	-				-0.0
3,218,052	+				-0.6
3,218,097	-				+0.8
3,218,188	+		Pf1N1B4_2871	0.23	-0.1
3,218,188	+		Pf1N1B4_2871	0.23	+0.6
3,218,189	-		Pf1N1B4_2871	0.23	+1.3
3,218,189	-		Pf1N1B4_2871	0.23	-1.5
3,218,278	+		Pf1N1B4_2871	0.49	+0.8
3,218,278	+		Pf1N1B4_2871	0.49	+0.4
3,218,279	-		Pf1N1B4_2871	0.49	-1.1
3,218,279	-		Pf1N1B4_2871	0.49	-0.6
3,218,279	-		Pf1N1B4_2871	0.49	-0.6
3,218,279	-		Pf1N1B4_2871	0.49	+3.6
3,218,279	-		Pf1N1B4_2871	0.49	+0.3
3,218,358	-		Pf1N1B4_2871	0.72	-2.2
3,218,358	-		Pf1N1B4_2871	0.72	-0.9
3,218,384	+		Pf1N1B4_2871	0.80	+0.6
3,218,419	+				-1.2
3,218,420	-				-1.1
3,218,538	+				-0.9
3,218,538	+				-1.2
3,218,546	+				-0.3
3,218,546	+				+0.8
3,218,709	+		Pf1N1B4_2872	0.11	-0.3
3,218,709	+		Pf1N1B4_2872	0.11	-0.8
3,218,709	+		Pf1N1B4_2872	0.11	-2.8
3,218,709	+		Pf1N1B4_2872	0.11	+1.2
3,218,710	-		Pf1N1B4_2872	0.11	-1.1
3,218,710	-		Pf1N1B4_2872	0.11	-3.0
3,218,710	-		Pf1N1B4_2872	0.11	-0.1
3,218,710	-		Pf1N1B4_2872	0.11	-0.8
3,218,710	-		Pf1N1B4_2872	0.11	-1.1
3,218,710	-		Pf1N1B4_2872	0.11	-0.9
3,218,710	-		Pf1N1B4_2872	0.11	+1.0
3,218,710	-		Pf1N1B4_2872	0.11	-2.6
3,218,840	+		Pf1N1B4_2872	0.19	-0.0
3,218,841	-		Pf1N1B4_2872	0.19	+0.2
3,218,841	-		Pf1N1B4_2872	0.19	-2.9
3,218,841	-		Pf1N1B4_2872	0.19	-1.9
3,218,841	-		Pf1N1B4_2872	0.19	-0.0
3,218,841	-		Pf1N1B4_2872	0.19	-0.4
3,218,841	-		Pf1N1B4_2872	0.19	-0.0