Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2188

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
2,500,881	-		Pf1N1B4_2188	0.53	+0.4
2,501,047	+		Pf1N1B4_2188	0.66	+0.2
2,501,122	+		Pf1N1B4_2188	0.72	+0.6
2,501,122	+		Pf1N1B4_2188	0.72	+0.8
2,501,382	+				+1.6
2,501,411	+				-0.4
2,501,480	+				+1.0
2,501,480	+				-2.5
2,501,481	-				-0.3
2,501,481	-				+2.2
2,501,481	-				-1.0
2,501,481	-				-1.4
2,501,481	-				+0.3
2,501,481	-				-1.0
2,501,481	-				+1.2
2,501,481	-				+0.8
2,501,481	-				-1.0
2,501,481	-				-0.0
2,501,481	-				+0.6
2,501,481	-				+0.2
2,501,481	-				-0.0
2,501,481	-				-1.6
2,501,484	+				-0.0
2,501,484	+				-1.9
2,501,484	+				+1.6
2,501,484	+				+0.2
2,501,484	+				-0.0
2,501,484	+				+1.6
2,501,484	+				+0.9
2,501,484	+				-0.3
2,501,485	-				+1.0
2,501,485	-				+0.2
2,501,485	-				-0.9
2,501,485	-				+1.0
2,501,485	-				-0.7
2,501,485	-				+0.4
2,501,485	-				+0.3
2,501,485	-				+0.6
2,501,485	-				-0.2
2,501,485	-				-2.1
2,501,525	-				-1.6
2,501,562	-				+0.6
2,501,654	+				+0.1
2,501,654	+				-1.7
2,501,655	-				+0.6
2,501,655	-				-2.3
2,501,655	-				-0.7
2,501,677	-				-0.7
2,501,686	+				+0.6
2,501,686	+				-0.0
2,501,686	+				-0.7
2,501,686	+				-0.1
2,501,686	+				-0.0
2,501,686	+				+0.6
2,501,687	-				+1.2
2,501,687	-				+0.6
2,501,687	-				+0.6
2,501,687	-				+1.0
2,501,687	-				-0.2
2,501,687	-				+0.2
2,501,687	-				+1.3
2,501,721	+				-1.7
2,501,798	+				-0.3
2,501,798	+				-0.7
2,501,900	+		Pf1N1B4_2189	0.15	-1.3
2,501,900	+		Pf1N1B4_2189	0.15	+0.6
2,502,020	+		Pf1N1B4_2189	0.37	-0.0
2,502,021	-		Pf1N1B4_2189	0.37	+0.6
2,502,148	+		Pf1N1B4_2189	0.60	-0.6
2,502,148	+		Pf1N1B4_2189	0.60	+0.8
2,502,149	-		Pf1N1B4_2189	0.60	+1.1
2,502,149	-		Pf1N1B4_2189	0.60	+0.6
2,502,149	-		Pf1N1B4_2189	0.60	+1.0
2,502,365	+				-0.4
2,502,375	+				-1.5
2,502,375	+				-0.2
2,502,375	+				+1.1
2,502,384	+				-0.3
2,502,385	-				-0.4
2,502,385	-				+0.5
2,502,385	-				+2.1
2,502,395	+				-0.6
2,502,395	+				-0.9
2,502,422	+				+1.0
2,502,450	+				+1.6
2,502,450	+				-0.0
2,502,450	+				-2.9
2,502,450	+				+1.0
2,502,451	-				-0.7
2,502,451	-				-0.5
2,502,451	-				+1.0
2,502,451	-				-0.0
2,502,451	-				+2.2
2,502,451	-				+2.0
2,502,451	-				+0.3
2,502,451	-				+1.4
2,502,451	-				+1.6