Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2146

Experiment: Nitrate reduction, replicate A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate A
2,455,283	+		Pf1N1B4_2144	0.57	+1.0
2,455,283	+		Pf1N1B4_2144	0.57	-0.5
2,455,305	-		Pf1N1B4_2144	0.59	+0.2
2,455,305	-		Pf1N1B4_2144	0.59	+1.6
2,455,349	+		Pf1N1B4_2144	0.62	+2.2
2,455,430	+		Pf1N1B4_2144	0.68	+0.4
2,455,430	+		Pf1N1B4_2144	0.68	+1.6
2,455,430	+		Pf1N1B4_2144	0.68	+0.4
2,455,430	+		Pf1N1B4_2144	0.68	+0.6
2,455,430	+		Pf1N1B4_2144	0.68	+0.3
2,455,430	+		Pf1N1B4_2144	0.68	+0.6
2,455,430	+		Pf1N1B4_2144	0.68	+2.6
2,455,430	+		Pf1N1B4_2144	0.68	-1.2
2,455,430	+		Pf1N1B4_2144	0.68	-1.0
2,455,430	+		Pf1N1B4_2144	0.68	+0.2
2,455,430	+		Pf1N1B4_2144	0.68	+1.6
2,455,430	+		Pf1N1B4_2144	0.68	+1.6
2,455,430	+		Pf1N1B4_2144	0.68	-1.2
2,455,430	+		Pf1N1B4_2144	0.68	+1.6
2,455,430	+		Pf1N1B4_2144	0.68	+0.6
2,455,430	+		Pf1N1B4_2144	0.68	+0.4
2,455,430	+		Pf1N1B4_2144	0.68	+0.6
2,455,430	+		Pf1N1B4_2144	0.68	-1.7
2,455,430	+		Pf1N1B4_2144	0.68	+0.4
2,455,430	+		Pf1N1B4_2144	0.68	-0.4
2,455,430	+		Pf1N1B4_2144	0.68	-0.7
2,455,430	+		Pf1N1B4_2144	0.68	+1.3
2,455,430	+		Pf1N1B4_2144	0.68	-1.0
2,455,430	+		Pf1N1B4_2144	0.68	+0.0
2,455,431	-		Pf1N1B4_2144	0.68	+0.6
2,455,431	-		Pf1N1B4_2144	0.68	+0.8
2,455,431	-		Pf1N1B4_2144	0.68	-0.4
2,455,431	-		Pf1N1B4_2144	0.68	+2.1
2,455,431	-		Pf1N1B4_2144	0.68	-0.7
2,455,431	-		Pf1N1B4_2144	0.68	-1.6
2,455,432	+		Pf1N1B4_2144	0.68	-0.4
2,455,432	+		Pf1N1B4_2144	0.68	+0.0
2,455,432	+		Pf1N1B4_2144	0.68	+0.6
2,455,432	+		Pf1N1B4_2144	0.68	-0.7
2,455,432	+		Pf1N1B4_2144	0.68	-0.7
2,455,433	-		Pf1N1B4_2144	0.69	+2.6
2,455,433	-		Pf1N1B4_2144	0.69	+0.6
2,455,433	-		Pf1N1B4_2144	0.69	+1.6
2,455,774	+				+0.3
2,455,774	+				-0.4
2,455,874	+		Pf1N1B4_2145	0.17	-1.7
2,456,013	+		Pf1N1B4_2145	0.56	-0.9
2,456,251	+				+0.0
2,457,325	+				-0.3
2,457,326	-				+0.3
2,457,326	-				-0.4
2,457,326	-				+2.6
2,457,398	+				+1.3
2,457,398	+				-0.7
2,457,398	+				+1.4
2,457,398	+				-2.0
2,457,399	-				+0.9
2,457,402	+				+1.0
2,457,402	+				+0.2
2,457,402	+				+2.7
2,457,403	-				-0.4
2,457,403	-				+1.2
2,457,403	-				+0.0
2,457,433	+				-0.4
2,457,434	-				-0.8
2,457,434	-				-1.5
2,457,434	-				-0.1
2,457,550	-		Pf1N1B4_2147	0.15	+0.9
2,457,694	+		Pf1N1B4_2147	0.41	+0.0
2,457,694	+		Pf1N1B4_2147	0.41	+1.6
2,457,695	-		Pf1N1B4_2147	0.41	+1.6
2,457,796	+		Pf1N1B4_2147	0.60	+0.9
2,457,925	+		Pf1N1B4_2147	0.83	+0.6
2,457,925	+		Pf1N1B4_2147	0.83	+0.0
2,457,925	+				+1.6
2,457,925	+		Pf1N1B4_2147	0.83	+1.2
2,457,925	+		Pf1N1B4_2147	0.83	+1.6
2,457,925	+				+1.6
2,457,925	+		Pf1N1B4_2147	0.83	+1.6
2,457,925	+		Pf1N1B4_2147	0.83	+0.9
2,457,926	-		Pf1N1B4_2147	0.83	+0.6
2,457,926	-		Pf1N1B4_2147	0.83	-1.0
2,457,928	+		Pf1N1B4_2147	0.84	-0.2
2,457,928	+		Pf1N1B4_2147	0.84	-1.5
2,457,928	+		Pf1N1B4_2147	0.84	-0.4
2,457,928	+		Pf1N1B4_2147	0.84	-0.4
2,457,928	+		Pf1N1B4_2147	0.84	+1.0
2,457,928	+				+0.9
2,457,929	-		Pf1N1B4_2147	0.84	+0.0
2,457,929	-		Pf1N1B4_2147	0.84	+0.6
2,458,016	-				+1.9
2,458,060	+				+0.8
2,458,060	+				+0.5
2,458,061	-				-1.6
2,458,061	-				-1.0
2,458,061	-				-0.7
2,458,061	-				+0.3
2,458,061	-				+0.3
2,458,061	-				-1.2
2,458,061	-				+2.6
2,458,119	-				-0.8
2,458,124	+				+0.6
2,458,125	-				+0.3
2,458,125	-				+1.1
2,458,125	-				+0.1
2,458,126	+				+0.1
2,458,126	+				+0.3
2,458,126	+				-0.4
2,458,126	+				+0.0
2,458,126	+				-0.2
2,458,126	+				-0.2
2,458,127	-				-1.2
2,458,127	-				+0.7
2,458,127	-				+0.6
2,458,127	-				+0.3
2,458,127	-				+0.2
2,458,127	-				-1.5
2,458,127	-				-0.1
2,458,127	-				-1.6
2,458,127	-				-0.3
2,458,127	-				-0.1
2,458,127	-				-0.1
2,458,127	-				+0.9
2,458,127	-				-1.0
2,458,127	-				-0.6
2,458,127	-				+1.0
2,458,127	-				-0.7
2,458,127	-				-2.7
2,458,127	-				-1.6
2,458,127	-				-2.1
2,458,127	-				-0.2
2,458,127	-				-0.3
2,458,127	-				-1.7
2,458,127	-				+0.3
2,458,127	-				-1.1
2,458,127	-				+1.3
2,458,127	-				-0.6
2,458,127	-				+0.6
2,458,127	-				-0.5
2,458,127	-				-0.4
2,458,127	-				-0.4
2,458,127	-				+0.0
2,458,166	-				-1.9
2,458,183	+				-1.5
2,458,183	+				+1.6
2,458,183	+				-1.3
2,458,183	+				-1.0
2,458,183	+				-0.7
2,458,183	+				-1.0
2,458,184	-				+1.9
2,458,184	-				-0.1
2,458,184	-				+1.4
2,458,184	-				-2.3
2,458,184	-				+1.6
2,458,184	-				+0.9
2,458,184	-				-1.1
2,458,184	-				-1.6
2,458,184	-				+1.6
2,458,184	-				-0.9
2,458,195	+				+0.0
2,458,195	+				-0.3
2,458,195	+				-0.3
2,458,195	+				-0.4
2,458,195	+				+2.6
2,458,195	+				-1.0
2,458,195	+				-0.1
2,458,195	+				+0.0
2,458,195	+				-0.4
2,458,195	+				-0.4
2,458,195	+				-1.7
2,458,195	+				+0.3
2,458,195	+				+1.0
2,458,195	+				+0.0
2,458,195	+				+1.3
2,458,195	+				-0.2
2,458,195	+				+0.4
2,458,195	+				+1.0
2,458,195	+				-1.2
2,458,195	+				+0.6
2,458,195	+				-1.4
2,458,195	+				+0.0
2,458,195	+				-1.9
2,458,195	+				-0.1
2,458,195	+				+0.0
2,458,195	+				+0.6
2,458,195	+				+0.6
2,458,195	+				-0.8
2,458,195	+				-0.6
2,458,195	+				-1.6
2,458,195	+				-0.2
2,458,195	+				+0.4
2,458,195	+				-1.0
2,458,195	+				+1.6
2,458,195	+				+2.2
2,458,196	-				+0.0
2,458,196	-				-0.2
2,458,196	-				+0.2
2,458,196	-				+1.6
2,458,196	-				-0.4
2,458,196	-				+0.3
2,458,196	-				-0.4
2,458,196	-				+0.4
2,458,196	-				-0.3
2,458,196	-				+1.0
2,458,196	-				+1.6
2,458,196	-				-0.4
2,458,196	-				-0.4
2,458,196	-				+0.0
2,458,196	-				-0.2
2,458,196	-				-1.6
2,458,196	-				-2.6
2,458,196	-				+0.0
2,458,196	-				+1.6
2,458,196	-				+0.6
2,458,196	-				-0.9
2,458,196	-				-0.2
2,458,196	-				-1.5
2,458,196	-				-1.5
2,458,196	-				-0.1
2,458,196	-				+1.6
2,458,196	-				-0.6
2,458,196	-				+0.6
2,458,196	-				-1.4
2,458,199	+				-0.7
2,458,199	+				-2.3
2,458,199	+				+0.6
2,458,199	+				-0.7
2,458,199	+				+0.0
2,458,199	+				-0.4
2,458,200	-				+0.0
2,458,200	-				+0.0
2,458,200	-				+0.7
2,458,200	-				-0.5
2,458,200	-				-0.7
2,458,228	+				+0.3
2,458,229	-				-0.4
2,458,274	+				+0.2
2,458,274	+				+0.6
2,458,275	-				+1.6
2,458,280	+				+0.0
2,458,281	-				-1.0
2,458,281	-				-1.7
2,458,281	-				+1.0
2,458,281	-				-0.4
2,458,281	-				-0.5