Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1940

Experiment: Nitrate reduction, replicate A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1938 and Pf1N1B4_1939 are separated by 448 nucleotidesPf1N1B4_1939 and Pf1N1B4_1940 are separated by 12 nucleotidesPf1N1B4_1940 and Pf1N1B4_1941 are separated by 21 nucleotides Pf1N1B4_1938 - ATP synthase F0 sector subunit a, at 2,218,252 to 2,219,121 _1938 Pf1N1B4_1939 - ATP synthase F0 sector subunit b, at 2,219,570 to 2,220,040 _1939 Pf1N1B4_1940 - ATP synthase delta chain (EC 3.6.3.14), at 2,220,053 to 2,220,589 _1940 Pf1N1B4_1941 - ATP synthase alpha chain (EC 3.6.3.14), at 2,220,611 to 2,222,155 _1941 Position (kb) 2220 2221Strain fitness (log2 ratio) -1 0 1at 2219.119 kb on + strandat 2219.119 kb on + strandat 2219.119 kb on + strandat 2219.119 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A
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2,219,119 + -0.9
2,219,119 + +1.6
2,219,119 + -1.7
2,219,119 + +0.5

Or see this region's nucleotide sequence