Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1605

Experiment: Nitrate reduction, replicate A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_1604 and Pf1N1B4_1605 are separated by 174 nucleotidesPf1N1B4_1605 and Pf1N1B4_1606 overlap by 33 nucleotides Pf1N1B4_1604 - tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis, at 1,849,392 to 1,850,846 _1604 Pf1N1B4_1605 - hypothetical protein, at 1,851,021 to 1,851,209 _1605 Pf1N1B4_1606 - Glutamine synthetase type I (EC 6.3.1.2), at 1,851,177 to 1,852,583 _1606 Position (kb) 1851 1852Strain fitness (log2 ratio) -1 0 1 2 3 4at 1850.892 kb on - strandat 1851.022 kb on + strandat 1851.022 kb on + strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.023 kb on - strandat 1851.024 kb on + strandat 1851.024 kb on + strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strandat 1851.025 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate A
remove
1,850,892 - -0.5
1,851,022 + +0.6
1,851,022 + -0.0
1,851,023 - +0.0
1,851,023 - +2.3
1,851,023 - -0.4
1,851,023 - +3.9
1,851,023 - -1.0
1,851,023 - +0.3
1,851,023 - -0.0
1,851,023 - -1.0
1,851,023 - +1.0
1,851,023 - +0.1
1,851,024 + -0.8
1,851,024 + -0.0
1,851,025 - -0.8
1,851,025 - +0.8
1,851,025 - +1.4
1,851,025 - -0.4
1,851,025 - -0.5
1,851,025 - +0.7
1,851,025 - +0.4
1,851,025 - -1.5
1,851,025 - -0.4
1,851,025 - +1.4
1,851,025 - -0.3

Or see this region's nucleotide sequence