Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17415 and RS_RS17420 are separated by 24 nucleotides RS_RS17420 and RS_RS17425 overlap by 4 nucleotides
RS_RS17415: RS_RS17415 - sarcosine oxidase subunit beta family protein, at 50,382 to 51,626
_RS17415
RS_RS17420: RS_RS17420 - sarcosine oxidase subunit delta, at 51,651 to 51,974
_RS17420
RS_RS17425: RS_RS17425 - FAD-dependent oxidoreductase, at 51,971 to 55,057
_RS17425
Position (kb) 51
52 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.659 kb on - strand, within RS_RS17415 at 50.706 kb on + strand, within RS_RS17415 at 51.222 kb on + strand, within RS_RS17415 at 51.222 kb on + strand, within RS_RS17415 at 51.222 kb on + strand, within RS_RS17415 at 51.222 kb on + strand, within RS_RS17415 at 51.222 kb on + strand, within RS_RS17415 at 51.222 kb on + strand, within RS_RS17415 at 51.223 kb on - strand, within RS_RS17415 at 51.223 kb on - strand, within RS_RS17415 at 51.223 kb on - strand, within RS_RS17415 at 51.223 kb on - strand, within RS_RS17415 at 51.223 kb on - strand, within RS_RS17415 at 51.451 kb on - strand, within RS_RS17415 at 51.508 kb on + strand at 51.576 kb on + strand at 51.576 kb on + strand at 51.577 kb on - strand at 51.631 kb on + strand at 51.631 kb on + strand at 51.631 kb on + strand at 51.632 kb on - strand at 51.774 kb on + strand, within RS_RS17420 at 51.876 kb on + strand, within RS_RS17420 at 51.876 kb on + strand, within RS_RS17420 at 51.877 kb on - strand, within RS_RS17420 at 51.877 kb on - strand, within RS_RS17420 at 52.048 kb on + strand at 52.052 kb on + strand at 52.052 kb on + strand at 52.053 kb on - strand at 52.053 kb on - strand at 52.053 kb on - strand at 52.053 kb on - strand at 52.130 kb on + strand at 52.130 kb on + strand at 52.131 kb on - strand at 52.346 kb on + strand, within RS_RS17425 at 52.346 kb on + strand, within RS_RS17425 at 52.347 kb on - strand, within RS_RS17425 at 52.349 kb on + strand, within RS_RS17425 at 52.349 kb on + strand, within RS_RS17425 at 52.350 kb on - strand, within RS_RS17425 at 52.350 kb on - strand, within RS_RS17425 at 52.350 kb on - strand, within RS_RS17425 at 52.388 kb on + strand, within RS_RS17425 at 52.467 kb on - strand, within RS_RS17425 at 52.729 kb on + strand, within RS_RS17425 at 52.730 kb on - strand, within RS_RS17425
Per-strain Table
Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days remove 50,659 - RS_RS17415 0.22 -0.2 50,706 + RS_RS17415 0.26 -1.8 51,222 + RS_RS17415 0.67 -0.6 51,222 + RS_RS17415 0.67 +1.0 51,222 + RS_RS17415 0.67 +0.2 51,222 + RS_RS17415 0.67 -0.1 51,222 + RS_RS17415 0.67 +0.4 51,222 + RS_RS17415 0.67 +0.2 51,223 - RS_RS17415 0.68 -0.6 51,223 - RS_RS17415 0.68 +0.2 51,223 - RS_RS17415 0.68 -1.9 51,223 - RS_RS17415 0.68 -0.2 51,223 - RS_RS17415 0.68 -0.9 51,451 - RS_RS17415 0.86 -2.1 51,508 + -0.4 51,576 + -0.4 51,576 + -0.1 51,577 - -0.7 51,631 + +2.0 51,631 + -0.3 51,631 + -0.0 51,632 - +0.4 51,774 + RS_RS17420 0.38 -0.2 51,876 + RS_RS17420 0.69 +1.2 51,876 + RS_RS17420 0.69 +0.6 51,877 - RS_RS17420 0.70 +0.1 51,877 - RS_RS17420 0.70 +0.1 52,048 + +0.4 52,052 + +0.4 52,052 + +0.5 52,053 - +0.7 52,053 - +0.9 52,053 - +0.7 52,053 - +0.6 52,130 + -0.4 52,130 + -1.2 52,131 - +1.0 52,346 + RS_RS17425 0.12 -0.5 52,346 + RS_RS17425 0.12 -0.3 52,347 - RS_RS17425 0.12 +0.1 52,349 + RS_RS17425 0.12 -1.0 52,349 + RS_RS17425 0.12 -0.2 52,350 - RS_RS17425 0.12 -1.3 52,350 - RS_RS17425 0.12 -1.2 52,350 - RS_RS17425 0.12 +1.0 52,388 + RS_RS17425 0.14 -0.0 52,467 - RS_RS17425 0.16 -0.6 52,729 + RS_RS17425 0.25 -0.2 52,730 - RS_RS17425 0.25 -0.0
Or see this region's nucleotide sequence