Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS09950

Experiment: water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS09945 and RS_RS09950 are separated by 81 nucleotidesRS_RS09950 and RS_RS09955 are separated by 37 nucleotidesRS_RS09955 and RS_RS09960 are separated by 14 nucleotides RS_RS09945: RS_RS09945 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 2,153,414 to 2,154,712 _RS09945 RS_RS09950: RS_RS09950 - acetyl-CoA carboxylase carboxyltransferase subunit beta, at 2,154,794 to 2,155,666 _RS09950 RS_RS09955: RS_RS09955 - tryptophan synthase subunit alpha, at 2,155,704 to 2,156,501 _RS09955 RS_RS09960: RS_RS09960 - site-specific DNA-methyltransferase, at 2,156,516 to 2,157,328 _RS09960 Position (kb) 2154 2155 2156Strain fitness (log2 ratio) -1 0 1at 2155.756 kb on - strandat 2155.984 kb on + strand, within RS_RS09955at 2156.610 kb on + strand, within RS_RS09960

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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2,155,756 - -0.6
2,155,984 + RS_RS09955 0.35 -0.6
2,156,610 + RS_RS09960 0.12 -0.0

Or see this region's nucleotide sequence