Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02320

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02315 and RS_RS02320 are separated by 76 nucleotidesRS_RS02320 and RS_RS02325 are separated by 1 nucleotidesRS_RS02325 and RS_RS02330 overlap by 4 nucleotides RS_RS02315: RS_RS02315 - hypothetical protein, at 499,204 to 500,073 _RS02315 RS_RS02320: RS_RS02320 - dihydroneopterin triphosphate diphosphatase, at 500,150 to 500,623 _RS02320 RS_RS02325: RS_RS02325 - EEP domain-containing protein, at 500,625 to 501,371 _RS02325 RS_RS02330: RS_RS02330 - cardiolipin synthase ClsB, at 501,368 to 502,636 _RS02330 Position (kb) 500 501Strain fitness (log2 ratio) -1 0 1 2 3at 499.167 kb on + strandat 499.591 kb on + strand, within RS_RS02315at 500.105 kb on + strandat 500.650 kb on - strandat 500.650 kb on - strandat 500.805 kb on + strand, within RS_RS02325at 500.806 kb on - strand, within RS_RS02325at 500.821 kb on - strand, within RS_RS02325at 500.871 kb on + strand, within RS_RS02325at 500.871 kb on + strand, within RS_RS02325at 500.871 kb on + strand, within RS_RS02325at 500.872 kb on - strand, within RS_RS02325at 501.267 kb on + strand, within RS_RS02325at 501.267 kb on + strand, within RS_RS02325at 501.268 kb on - strand, within RS_RS02325at 501.528 kb on - strand, within RS_RS02330at 501.528 kb on - strand, within RS_RS02330at 501.534 kb on - strand, within RS_RS02330at 501.534 kb on - strand, within RS_RS02330at 501.534 kb on - strand, within RS_RS02330at 501.534 kb on - strand, within RS_RS02330at 501.534 kb on - strand, within RS_RS02330

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
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499,167 + +0.2
499,591 + RS_RS02315 0.44 -1.2
500,105 + -1.5
500,650 - +0.3
500,650 - +0.5
500,805 + RS_RS02325 0.24 +3.4
500,806 - RS_RS02325 0.24 +0.7
500,821 - RS_RS02325 0.26 +0.6
500,871 + RS_RS02325 0.33 +0.6
500,871 + RS_RS02325 0.33 +0.7
500,871 + RS_RS02325 0.33 -0.0
500,872 - RS_RS02325 0.33 -0.2
501,267 + RS_RS02325 0.86 +0.1
501,267 + RS_RS02325 0.86 -0.4
501,268 - RS_RS02325 0.86 +0.2
501,528 - RS_RS02330 0.13 +0.4
501,528 - RS_RS02330 0.13 -0.3
501,534 - RS_RS02330 0.13 +0.3
501,534 - RS_RS02330 0.13 +1.1
501,534 - RS_RS02330 0.13 -0.1
501,534 - RS_RS02330 0.13 +0.7
501,534 - RS_RS02330 0.13 +0.8

Or see this region's nucleotide sequence