Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25890

Experiment: malate (C) and Ammonium chloride (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS25885 and PFLU_RS25890 are separated by 259 nucleotidesPFLU_RS25890 and PFLU_RS25895 are separated by 10 nucleotides PFLU_RS25885: PFLU_RS25885 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 5,781,412 to 5,782,548 _RS25885 PFLU_RS25890: PFLU_RS25890 - 4-hydroxy-tetrahydrodipicolinate reductase, at 5,782,808 to 5,783,614 _RS25890 PFLU_RS25895: PFLU_RS25895 - molecular chaperone DnaJ, at 5,783,625 to 5,784,749 _RS25895 Position (kb) 5782 5783 5784Strain fitness (log2 ratio) -2 -1 0 1 2at 5782.562 kb on - strandat 5782.562 kb on - strandat 5782.562 kb on - strandat 5782.566 kb on - strandat 5782.566 kb on - strandat 5782.566 kb on - strandat 5782.566 kb on - strandat 5782.566 kb on - strandat 5782.566 kb on - strandat 5782.566 kb on - strandat 5782.594 kb on - strandat 5782.612 kb on - strandat 5782.612 kb on - strandat 5782.671 kb on - strandat 5782.671 kb on - strandat 5782.679 kb on - strandat 5782.679 kb on - strandat 5782.679 kb on - strandat 5782.723 kb on - strandat 5782.760 kb on + strandat 5782.773 kb on + strandat 5782.773 kb on + strandat 5782.773 kb on + strandat 5782.773 kb on + strandat 5782.773 kb on + strandat 5782.773 kb on + strandat 5782.773 kb on + strandat 5782.773 kb on + strandat 5782.773 kb on + strandat 5782.774 kb on - strandat 5782.774 kb on - strandat 5782.774 kb on - strandat 5782.774 kb on - strandat 5782.774 kb on - strandat 5782.779 kb on + strandat 5782.779 kb on + strandat 5782.779 kb on + strandat 5782.779 kb on + strandat 5782.779 kb on + strandat 5782.779 kb on + strandat 5782.780 kb on - strandat 5782.780 kb on - strandat 5782.780 kb on - strandat 5782.780 kb on - strandat 5782.780 kb on - strandat 5782.780 kb on - strandat 5782.798 kb on + strandat 5782.798 kb on + strandat 5782.798 kb on + strandat 5782.802 kb on + strandat 5782.803 kb on - strandat 5782.809 kb on + strandat 5782.810 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction malate (C) and Ammonium chloride (N); with MOPS
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5,782,562 - -0.8
5,782,562 - -0.3
5,782,562 - -0.1
5,782,566 - +2.5
5,782,566 - -0.1
5,782,566 - -0.1
5,782,566 - +0.7
5,782,566 - -1.1
5,782,566 - +1.5
5,782,566 - -0.2
5,782,594 - -1.6
5,782,612 - -1.1
5,782,612 - -0.7
5,782,671 - -0.3
5,782,671 - -0.0
5,782,679 - +0.3
5,782,679 - +0.1
5,782,679 - +0.9
5,782,723 - -0.1
5,782,760 + -2.3
5,782,773 + +0.3
5,782,773 + -0.7
5,782,773 + +0.9
5,782,773 + +0.6
5,782,773 + -0.1
5,782,773 + +0.3
5,782,773 + -0.2
5,782,773 + +0.7
5,782,773 + -0.4
5,782,774 - +0.1
5,782,774 - -0.3
5,782,774 - -0.5
5,782,774 - -1.4
5,782,774 - +0.8
5,782,779 + -1.1
5,782,779 + +0.7
5,782,779 + -0.2
5,782,779 + +0.8
5,782,779 + +1.0
5,782,779 + -0.1
5,782,780 - -0.8
5,782,780 - -0.3
5,782,780 - +0.6
5,782,780 - +0.6
5,782,780 - +1.0
5,782,780 - -0.8
5,782,798 + -0.7
5,782,798 + -1.0
5,782,798 + +0.3
5,782,802 + +0.5
5,782,803 - -0.9
5,782,809 + +0.3
5,782,810 - +0.5

Or see this region's nucleotide sequence